RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1192965" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1192965 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9248418 9248418 PRJNA1192965_P_NODE_1488_length_335_cov_1.763359_g1469_i0 PRJNA1192965 1488 335 1.763359 5.90725265 Bacteria 2 Bacteria Bacteria 178 2.89e-51   NR MCH2451948.1 2026742 g1469 i0 73.9 4.97014925373134 111 29 99.4 0 334 2 252 362 MCH2451948.1 adenosylhomocysteinase [Gemmatimonadota bacterium] diamond 1665 179 0.994413407821229 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
31209346 31209346 PRJNA1192965_P_NODE_795_length_424_cov_1.316239_g776_i0 PRJNA1192965 795 424 1.316239 5.58085336 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 62 4.76e-8   NR MDP3774453.1 2448054 g776 i0 36.1 1.0188679245283 144 72 96.2 6 1 408 240 371 MDP3774453.1 reverse transcriptase domain-containing protein [Gemmatimonadales bacterium] diamond 432 62 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;