RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1192965" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1192965 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16344911 16344911 PRJNA1192965_P_NODE_293_length_660_cov_3.505963_g275_i0 PRJNA1192965 293 660 3.505963 23.1393558 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 229 7.62e-73   NR CEP02281.1 37360 g275 i0 61.3 4.69545454545455 204 76 92.7 2 647 36 1 201 CEP02281.1 hypothetical protein PBRA_008865 [Plasmodiophora brassicae] diamond 3099 229 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
25268585 25268585 PRJNA1192965_P_NODE_3980_length_247_cov_0.885057_g3961_i0 PRJNA1192965 3980 247 0.885057 2.18609079 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 135 4e-35   NR CEO97960.1 37360 g3961 i0 70.4 1.96761133603239 81 24 98.4 0 3 245 489 569 CEO97960.1 hypothetical protein PBRA_006074 [Plasmodiophora brassicae] diamond 486 136 0.992647058823529 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;