RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1192965" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1192965 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27072330 27072330 PRJNA1192965_P_NODE_3842_length_248_cov_0.880000_g3823_i0 PRJNA1192965 3842 248 0.88 2.1824 Chloroflexota bacterium 2026724 Bacteria Bacteria 48.9 2.54e-4   NR RMG70180.1 2026724 g3823 i0 43.4 0.641129032258065 53 25 58.1 1 104 247 7 59 RMG70180.1 MAG: hypothetical protein D6711_18025 [Chloroflexota bacterium] diamond 159 48.9 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
27533756 27533756 PRJNA1192965_P_NODE_2243_length_288_cov_1.237209_g2224_i0 PRJNA1192965 2243 288 1.237209 3.56316192 Chloroflexota 200795 Bacteria Bacteria 57.8 2.17e-7   NR MCZ2111889.1 2026734 g2224 i0 42.4 1.91666666666667 92 40 95.8 3 286 11 138 216 MCZ2111889.1 biotin--[acetyl-CoA-carboxylase] ligase [Dehalococcoidia bacterium] diamond 552 57.8 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
27641222 27641222 PRJNA1192965_P_NODE_4864_length_242_cov_1.792899_g4845_i0 PRJNA1192965 4864 242 1.792899 4.33881558 Thermoflexales bacterium 2497639 Bacteria Bacteria 92.4 1.16e-19   NR MBP7687209.1 2497639 g4845 i0 50.6 1.00413223140496 81 39 99.2 1 1 240 268 348 MBP7687209.1 substrate-binding domain-containing protein [Thermoflexales bacterium] diamond 243 92.4 1 Bacteria   Bacillati Chloroflexota Thermoflexia Thermoflexales     Thermoflexales bacterium
32127365 32127365 PRJNA1192965_P_NODE_5198_length_241_cov_0.916667_g5179_i0 PRJNA1192965 5198 241 0.916667 2.20916747 Chloroflexota bacterium 2026724 Bacteria Bacteria 156 1.59e-42   NR MCA0455724.1 2026724 g5179 i0 97.5 0.983402489626556 79 2 98.3 0 239 3 288 366 MCA0455724.1 toll/interleukin-1 receptor domain-containing protein [Chloroflexota bacterium] diamond 237 156 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;