RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA1192965", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA1192965 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2317739 2317739 PRJNA1192965_P_NODE_2302_length_286_cov_1.084507_g2283_i0 PRJNA1192965 2302 286 1.084507 3.10169002 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 112 9.929999999999999e-30   NR GJM17742.1 2202153 g2283 i0 64.2 0.996503496503496 95 27 99.7 1 1 285 3 90 GJM17742.1 MAG: hypothetical protein DHS20C13_30690 [Thermodesulfobacteriota bacterium] diamond 285 112 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
28935637 28935637 PRJNA1192965_P_NODE_4828_length_243_cov_0.905882_g4809_i0 PRJNA1192965 4828 243 0.905882 2.20129326 Desulfotignum sp. 2049434 Bacteria Bacteria 72 1.49e-12   NR MEX1313006.1 2049434 g4809 i0 46.8 5.62962962962963 77 29 95.1 1 242 12 281 345 MEX1313006.1 ADP-ribosylglycohydrolase family protein [Desulfotignum sp.] diamond 1368 72 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae Desulfotignum Desulfotignum sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;