RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1192965", tax_kingdom = "Pseudomonadati" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA1192965 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30122858 30122858 PRJNA1192965_P_NODE_3572_length_250_cov_0.870056_g3553_i0 PRJNA1192965 3572 250 0.870056 2.17514 root 1 Root_unresolved Root_unresolved 59.3 2.26e-9   NR HBD68152.1 166 g3553 i0 46.6 3.96 58 31 69.6 0 56 229 4 61 HBD68152.1 RNA-binding protein [Treponema sp.] diamond 990 59.3 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp.
31273096 31273096 PRJNA1192965_P_NODE_3535_length_250_cov_0.870056_g3516_i0 PRJNA1192965 3535 250 0.870056 2.17514 Spirochaetales bacterium 2026792 Bacteria Bacteria 43.9 0.0159   NR MFP4645001.1 2026792 g3516 i0 36.1 3.3 72 46 86.4 0 247 32 289 360 MFP4645001.1 SulP family inorganic anion transporter [Spirochaetales bacterium] diamond 825 43.9 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales     Spirochaetales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;