RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA1192965", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 7 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 7 ✖

bioproject 1

  • PRJNA1192965 · 7 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6698359 6698359 PRJNA1192965_P_NODE_1446_length_339_cov_2.274436_g1427_i0 PRJNA1192965 1446 339 2.274436 7.71033804 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 172 1.53e-50   NR RYD65414.1 2026800 g1427 i0 79.4 1.74336283185841 97 20 85.8 0 2 292 239 335 RYD65414.1 MAG: hypothetical protein EOP84_31955 [Verrucomicrobiaceae bacterium] diamond 591 172 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
9970517 9970517 PRJNA1192965_P_NODE_3448_length_250_cov_1.440678_g3429_i0 PRJNA1192965 3448 250 1.440678 3.601695 Chthoniobacter sp. 2510640 Bacteria Bacteria 149 1.07e-40   NR MDR3405335.1 2510640 g3429 i0 83.1 0.996 83 14 99.6 0 2 250 216 298 MDR3405335.1 translation elongation factor EF1A family protein [Chthoniobacter sp.] diamond 249 149 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Chthoniobacter Chthoniobacter sp.
26945698 26945698 PRJNA1192965_P_NODE_1462_length_338_cov_1.060377_g1443_i0 PRJNA1192965 1462 338 1.060377 3.58407426 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 168 6.62e-49   NR RME68863.1 2026799 g1443 i0 74.5 4.81952662721894 106 26 93.2 1 320 6 1 106 RME68863.1 MAG: nucleotide sugar dehydrogenase, partial [Verrucomicrobiota bacterium] diamond 1629 168 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28544345 28544345 PRJNA1192965_P_NODE_187_length_793_cov_2.154167_g173_i0 PRJNA1192965 187 793 2.154167 17.08254431 Pseudomonadati 3379134 Bacteria Bacteria 70.9 1.32e-10   NR MEO5753320.1 2201154 g173 i0 33.8 1.64564943253468 145 88 54.5 4 84 515 83 220 MEO5753320.1 CAP domain-containing protein [Chthoniobacterales bacterium] diamond 1305 71.2 0.995786516853933 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium
30577650 30577650 PRJNA1192965_P_NODE_3153_length_254_cov_1.701657_g3134_i0 PRJNA1192965 3153 254 1.701657 4.32220878 Pedosphaera sp. 2024890 Bacteria Bacteria 88.2 2.3e-18   NR MDB6022869.1 2024890 g3134 i0 54.3 2.71653543307087 81 28 95.7 1 10 252 3 74 MDB6022869.1 prpC [Pedosphaera sp.] diamond 690 88.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Pedosphaerae Pedosphaerales Pedosphaeraceae Pedosphaera Pedosphaera sp.
32063790 32063790 PRJNA1192965_P_NODE_5098_length_241_cov_0.916667_g5079_i0 PRJNA1192965 5098 241 0.916667 2.20916747 Opitutia bacterium 2026771 Bacteria Bacteria 48.9 2.55e-4   NR MBI2513265.1 2026771 g5079 i0 45.3 0.933609958506224 75 37 93.4 3 238 14 122 192 MBI2513265.1 VCBS repeat-containing protein [Opitutia bacterium] diamond 225 48.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia       Opitutia bacterium
32095486 32095486 PRJNA1192965_P_NODE_2778_length_267_cov_1.664948_g2759_i0 PRJNA1192965 2778 267 1.664948 4.44541116 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 50.8 7.16e-5   NR MEI6082434.1 2026799 g2759 i0 36.3 1.02247191011236 91 51 97.8 4 266 6 434 521 MEI6082434.1 endonuclease/exonuclease/phosphatase family protein [Verrucomicrobiota bacterium] diamond 273 50.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;