RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA1188114" and tax_phylum = "Oomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1188114 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12520765 12520765 PRJNA1188114_P_NODE_17890_length_162_cov_1.283186_g17838_i0 PRJNA1188114 17890 162 1.283186 2.07876132 root 1 Root_unresolved Root_unresolved 219 1.26e-52   NTclustered gi|166046477|emb|CU367594.1| 100861 g17838 i0 99.174 247.271604938272 121 1 75 0 42 162 710 590 Aphanomyces euteiches cDNA blastn 40058 219 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
27122685 27122685 PRJNA1188114_P_NODE_20342_length_156_cov_2.233645_g20290_i0 PRJNA1188114 20342 156 2.233645 3.4844862 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 80.1 7.51e-16   NR KAG1703944.1 4784 g20290 i0 72.5 89.5769230769231 51 14 98.1 0 154 2 368 418 KAG1703944.1 hypothetical protein DVH05_006951 [Phytophthora capsici] diamond 13974 80.9 0.990111248454882 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
28670526 28670526 PRJNA1188114_P_NODE_20267_length_157_cov_2.648148_g20215_i0 PRJNA1188114 20267 157 2.648148 4.15759236 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 78.6 1.24e-15   NR DAZ94346.1 4803 g20215 i0 63.5 4.89171974522293 52 19 99.4 0 156 1 223 274 DAZ94346.1 TPA: hypothetical protein N0F65_000910 [Lagenidium giganteum] diamond 768 79 0.994936708860759 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
31937171 31937171 PRJNA1188114_P_NODE_11797_length_168_cov_1.285714_g11745_i0 PRJNA1188114 11797 168 1.285714 2.15999952 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 64.7 1.99e-11   NR KUF98607.1 4792 g11745 i0 62.3 2.76785714285714 53 20 94.6 0 162 4 10 62 KUF98607.1 Neutral ceramidase B [Phytophthora nicotianae] diamond 465 64.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;