RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1188114" and tax_phylum = "Evosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Evosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1188114 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14349027 14349027 PRJNA1188114_P_NODE_17152_length_163_cov_0.894737_g17100_i0 PRJNA1188114 17152 163 0.894737 1.45842131 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 105 8.89e-27   NR XP_003289015.1 5786 g17100 i0 87 10.9325153374233 54 7 99.4 0 163 2 61 114 XP_003289015.1 uncharacterized protein DICPUDRAFT_92215 [Dictyostelium purpureum] diamond 1782 106 0.990566037735849 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
15069861 15069861 PRJNA1188114_P_NODE_8912_length_180_cov_1.167939_g8860_i0 PRJNA1188114 8912 180 1.167939 2.1022902 Eumycetozoa 142796 Evosea other_Eukaryota 200 5.15e-47   NTclustered gi|2574169421|gb|OP631025.1| 385453 g8860 i0 87.861 97.1666666666667 173 18 95 3 6 176 979 808 Polyschismium granuliferum strain MM45973 elongation factor 1-alpha (EF1a) gene, partial cds blastn 17490 200 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Polyschismium Polyschismium granuliferum
24546066 24546066 PRJNA1188114_P_NODE_5160_length_203_cov_0.896104_g5108_i0 PRJNA1188114 5160 203 0.896104 1.81909112 Dictyostelium purpureum 5786 Evosea other_Eukaryota 163 7.83e-36   NTclustered gi|330792727|ref|XM_003284391.1| 5786 g5108 i0 82.447 92.7635467980296 188 31 92 2 1 187 822 1008 Dictyostelium purpureum elongation factor 1 alpha (DICPUDRAFT_52946), mRNA blastn 18831 163 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;