RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1188114", tax_kingdom = "Pseudomonadati" and tax_phylum = "Spirochaetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

bioproject 1

  • PRJNA1188114 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19445994 19445994 PRJNA1188114_P_NODE_13876_length_166_cov_0.871795_g13824_i0 PRJNA1188114 13876 166 0.871795 1.4471797 Treponema denticola 158 Bacteria Bacteria 276 7.58e-70   NTclustered gi|2277007739|gb|CP038800.1| 158 g13824 i0 96.951 27.7831325301205 164 5 99 0 1 164 2413737 2413900 Treponema denticola strain ATCC 700768 chromosome, complete genome blastn 4612 276 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema denticola
27439321 27439321 PRJNA1188114_P_NODE_16443_length_163_cov_1.789474_g16391_i0 PRJNA1188114 16443 163 1.789474 2.91684262 Treponema 157 Bacteria Bacteria 86.3 1.98e-18   NR WP_016518526.1 69710 g16391 i0 72.2 2.98159509202454 54 15 99.4 0 2 163 166 219 WP_016518526.1 L-lactate dehydrogenase [Treponema vincentii] diamond 486 86.3 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema vincentii
30894004 30894004 PRJNA1188114_P_NODE_17334_length_163_cov_0.894737_g17282_i0 PRJNA1188114 17334 163 0.894737 1.45842131 Spirochaetales bacterium 2026792 Bacteria Bacteria 72.8 1.93e-14   NR MCK5157238.1 2026792 g17282 i0 63 0.993865030674847 54 20 99.4 0 2 163 20 73 MCK5157238.1 methyltransferase domain-containing protein [Spirochaetales bacterium] diamond 162 72.8 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales     Spirochaetales bacterium
31829626 31829626 PRJNA1188114_P_NODE_11937_length_167_cov_1.728814_g11885_i0 PRJNA1188114 11937 167 1.728814 2.88711938 Treponema 157 Bacteria Bacteria 85.9 2.14e-18   NR WP_162663845.1 69710 g11885 i0 76.4 2.96407185628743 55 12 98.8 1 167 3 166 219 WP_162663845.1 TDE2508 family outer membrane beta-barrel protein [Treponema vincentii] diamond 495 85.9 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema vincentii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;