RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

23 rows where bioproject = "PRJNA1188114", tax_kingdom = "Pseudomonadati" and tax_phylum = "Acidobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 23 ✖

tax_kingdom 1

  • Pseudomonadati · 23 ✖

bioproject 1

  • PRJNA1188114 · 23 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2870737 2870737 PRJNA1188114_P_NODE_12783_length_167_cov_0.864407_g12731_i0 PRJNA1188114 12783 167 0.864407 1.44355969 Holophagales bacterium 2478486 Bacteria Bacteria 145 2.25e-30   NTclustered gi|1958024485|gb|CP064972.1| 2478486 g12731 i0 83.125 57.0299401197605 160 25 95 2 9 167 2820333 2820175 Holophagales bacterium isolate EsbW_18-Q3-R4-48_BAT3C.4_cln chromosome, complete genome blastn 9524 145 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales     Holophagales bacterium
6697889 6697889 PRJNA1188114_P_NODE_20046_length_161_cov_0.910714_g19994_i0 PRJNA1188114 20046 161 0.910714 1.46624954 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 68.6 9.52e-12   NR HKH46763.1 2651171 g19994 i0 97 3.07453416149068 33 1 61.5 0 62 160 1 33 HKH46763.1 carbamoyltransferase [Thermoanaerobaculia bacterium] diamond 495 68.6 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
26755646 26755646 PRJNA1188114_P_NODE_7661_length_185_cov_1.227941_g7609_i0 PRJNA1188114 7661 185 1.227941 2.27169085 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 91.7 6.61e-20   NR HSK74154.1 2283092 g7609 i0 70 1.96216216216216 60 18 97.3 0 6 185 304 363 HSK74154.1 tetratricopeptide repeat protein [Pyrinomonadaceae bacterium] diamond 363 91.7 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
27325245 27325245 PRJNA1188114_P_NODE_9803_length_176_cov_1.377953_g9751_i0 PRJNA1188114 9803 176 1.377953 2.42519728 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 97.4 4.37e-22   NR HEY3039857.1 2283092 g9751 i0 77.6 3.95454545454545 58 13 98.9 0 174 1 113 170 HEY3039857.1 DUF3179 domain-containing (seleno)protein [Pyrinomonadaceae bacterium] diamond 696 97.4 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
27830422 27830422 PRJNA1188114_P_NODE_12184_length_167_cov_0.864407_g12132_i0 PRJNA1188114 12184 167 0.864407 1.44355969 Acidobacteriota bacterium 1978231 Bacteria Bacteria 48.9 8.92e-5   NR MBM3787663.1 1978231 g12132 i0 50 0.754491017964072 42 21 75.4 0 142 17 144 185 MBM3787663.1 hypothetical protein [Acidobacteriota bacterium] diamond 126 48.9 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
28020073 28020073 PRJNA1188114_P_NODE_20365_length_155_cov_2.707547_g20313_i0 PRJNA1188114 20365 155 2.707547 4.19669785 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 90.5 5.52e-20   NR HXH24484.1 2910147 g20313 i0 84 8.80645161290323 50 8 96.8 0 152 3 139 188 HXH24484.1 galactose-1-phosphate uridylyltransferase [Vicinamibacterales bacterium] diamond 1365 90.5 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium
28430468 28430468 PRJNA1188114_P_NODE_11466_length_169_cov_1.700000_g11414_i0 PRJNA1188114 11466 169 1.7 2.873 Acidobacteriota bacterium 1978231 Bacteria Bacteria 48.5 1.26e-4   NR MEO8053233.1 1978231 g11414 i0 52.3 1.54437869822485 44 21 78.1 0 14 145 291 334 MEO8053233.1 IS1182 family transposase [Acidobacteriota bacterium] diamond 261 48.5 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
28746091 28746091 PRJNA1188114_P_NODE_13387_length_166_cov_0.871795_g13335_i0 PRJNA1188114 13387 166 0.871795 1.4471797 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 78.2 4.08e-15   NR HVE59534.1 2283092 g13335 i0 69.6 1.01204819277108 56 15 97.6 1 3 164 300 355 HVE59534.1 VCBS repeat-containing protein [Pyrinomonadaceae bacterium] diamond 168 78.2 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
28859744 28859744 PRJNA1188114_P_NODE_18368_length_162_cov_0.902655_g18316_i0 PRJNA1188114 18368 162 0.902655 1.4623011 Bacteria 2 Bacteria Bacteria 97.1 8.83e-22   NR MBS1798025.1 1978231 g18316 i0 92.6 9 54 4 100 0 162 1 270 323 MBS1798025.1 DUF4173 domain-containing protein [Acidobacteriota bacterium] diamond 1458 97.1 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
28903751 28903751 PRJNA1188114_P_NODE_13908_length_166_cov_0.871795_g13856_i0 PRJNA1188114 13908 166 0.871795 1.4471797 Blastocatellia bacterium 2052146 Bacteria Bacteria 65.5 1.15e-10   NR HJZ69458.1 2052146 g13856 i0 68.5 0.975903614457831 54 16 95.8 1 7 165 134 187 HJZ69458.1 UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase [Blastocatellia bacterium] diamond 162 65.5 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia       Blastocatellia bacterium
28999067 28999067 PRJNA1188114_P_NODE_10128_length_174_cov_2.440000_g10076_i0 PRJNA1188114 10128 174 2.44 4.2456 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 71.2 3.12e-13   NR HEX4229880.1 2212468 g10076 i0 64.8 2.82758620689655 54 19 93.1 0 164 3 111 164 HEX4229880.1 ankyrin repeat domain-containing protein [Bryobacteraceae bacterium] diamond 492 71.2 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
29030505 29030505 PRJNA1188114_P_NODE_10708_length_172_cov_1.853659_g10656_i0 PRJNA1188114 10708 172 1.853659 3.18829348 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 81.3 3.32e-16   NR MBX9599624.1 2212468 g10656 i0 73.7 0.994186046511628 57 15 99.4 0 1 171 10 66 MBX9599624.1 amidohydrolase family protein [Bryobacteraceae bacterium] diamond 171 81.3 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
29125294 29125294 PRJNA1188114_P_NODE_16869_length_163_cov_0.894737_g16817_i0 PRJNA1188114 16869 163 0.894737 1.45842131 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 87.4 2.19e-18   NR MEN6537227.1 2212468 g16817 i0 83 0.975460122699387 53 9 97.5 0 3 161 371 423 MEN6537227.1 hypothetical protein [Bryobacteraceae bacterium] diamond 159 87.4 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
29598291 29598291 PRJNA1188114_P_NODE_13770_length_166_cov_0.871795_g13718_i0 PRJNA1188114 13770 166 0.871795 1.4471797 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 88.2 1.28e-18   NR MBX5497055.1 2212468 g13718 i0 74.1 0.975903614457831 54 14 97.6 0 165 4 505 558 MBX5497055.1 tetratricopeptide repeat protein [Bryobacteraceae bacterium] diamond 162 88.2 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
29598294 29598294 PRJNA1188114_P_NODE_6110_length_191_cov_1.802817_g6058_i0 PRJNA1188114 6110 191 1.802817 3.44338047 Acidobacteriota bacterium 1978231 Bacteria Bacteria 43.9 0.00734   NR MEN3336403.1 1978231 g6058 i0 45.2 0.973821989528796 62 32 94.2 1 189 10 445 506 MEN3336403.1 hypothetical protein [Acidobacteriota bacterium] diamond 186 43.9 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
29724632 29724632 PRJNA1188114_P_NODE_2550_length_269_cov_2.190909_g2498_i0 PRJNA1188114 2550 269 2.190909 5.89354521 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 65.1 7.09e-10   NR HEY7390854.1 2212468 g2498 i0 42.4 0.947955390334573 85 47 94.8 1 1 255 963 1045 HEY7390854.1 hypothetical protein [Bryobacteraceae bacterium] diamond 255 65.1 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
30072265 30072265 PRJNA1188114_P_NODE_6252_length_190_cov_1.446809_g6200_i0 PRJNA1188114 6252 190 1.446809 2.7489371 Bryobacter sp. 1962911 Bacteria Bacteria 103 5.1899999999999996e-24   NR MCU0246426.1 1962911 g6200 i0 74.6 0.994736842105263 63 16 99.5 0 1 189 837 899 MCU0246426.1 TonB-dependent receptor [Bryobacter sp.] diamond 189 103 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae Bryobacter Bryobacter sp.
31146148 31146148 PRJNA1188114_P_NODE_10275_length_174_cov_1.456000_g10223_i0 PRJNA1188114 10275 174 1.456 2.53344 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 81.3 3.79e-16   NR HEX3646019.1 2910147 g10223 i0 68.4 0.982758620689655 57 18 98.3 0 172 2 144 200 HEX3646019.1 serine protease [Vicinamibacterales bacterium] diamond 171 81.3 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium
31652412 31652412 PRJNA1188114_P_NODE_11817_length_168_cov_1.084034_g11765_i0 PRJNA1188114 11817 168 1.084034 1.82117712 Blastocatellia bacterium 2052146 Bacteria Bacteria 76.3 2.11e-14   NR HQR37440.1 2052146 g11765 i0 68.8 2.78571428571429 48 15 85.7 0 25 168 462 509 HQR37440.1 M28 family peptidase [Blastocatellia bacterium] diamond 468 76.3 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia       Blastocatellia bacterium
31968854 31968854 PRJNA1188114_P_NODE_8898_length_180_cov_1.229008_g8846_i0 PRJNA1188114 8898 180 1.229008 2.2122144 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 55.8 3.63e-7   NR HKW03088.1 2910147 g8846 i0 47.4 0.95 57 19 95 1 172 2 102 147 HKW03088.1 hypothetical protein [Vicinamibacterales bacterium] diamond 171 55.8 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium
32063778 32063778 PRJNA1188114_P_NODE_6898_length_188_cov_1.244604_g6846_i0 PRJNA1188114 6898 188 1.244604 2.33985552 Acidobacteriota bacterium 1978231 Bacteria Bacteria 115 5.22e-31   NR MEK7725130.1 1978231 g6846 i0 91.9 0.98936170212766 62 5 98.9 0 2 187 11 72 MEK7725130.1 DNA starvation/stationary phase protection protein Dps [Acidobacteriota bacterium] diamond 186 115 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
32317308 32317308 PRJNA1188114_P_NODE_14579_length_165_cov_0.879310_g14527_i0 PRJNA1188114 14579 165 0.87931 1.4508615 Acidobacteriota bacterium 1978231 Bacteria Bacteria 55.8 7.13e-8   NR MDQ3710601.1 1978231 g14527 i0 54.5 1 55 22 94.5 1 156 1 63 117 MDQ3710601.1 hypothetical protein [Acidobacteriota bacterium] diamond 165 55.8 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
32853401 32853401 PRJNA1188114_P_NODE_15480_length_164_cov_0.886957_g15428_i0 PRJNA1188114 15480 164 0.886957 1.45460948 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 93.6 1.57e-20   NR HRH42843.1 2283092 g15428 i0 75.9 0.98780487804878 54 13 98.8 0 164 3 640 693 HRH42843.1 TonB-dependent receptor [Pyrinomonadaceae bacterium] diamond 162 93.6 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;