RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA1188114", tax_kingdom = "Fungi" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 1 ✖

tax_kingdom 1

  • Fungi · 1 ✖

tax_clade 1

bioproject 1

  • PRJNA1188114 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30596785 30596785 PRJNA1188114_P_NODE_6033_length_192_cov_1.069930_g5981_i0 PRJNA1188114 6033 192 1.06993 2.0542656 Fungi 4751 Fungi Fungi 85.1 1.31e-17   NR XP_031026927.1 1806994 g5981 i0 71.2 13 52 15 81.3 0 191 36 318 369 XP_031026927.1 uncharacterized protein SmJEL517_g01261 [Synchytrium microbalum] diamond 2496 85.1 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium microbalum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;