RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1186363", tax_phylum = "Spirochaetota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 6 ✖

tax_phylum 1

  • Spirochaetota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1186363 · 6 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27388559 27388559 PRJNA1186363_P_NODE_37103_length_261_cov_1.510638_g36215_i0 PRJNA1186363 37103 261 1.510638 3.94276518 Leptospiraceae bacterium 2026757 Bacteria Bacteria 47.8 7.94e-4   NR HMV45442.1 2026757 g36215 i0 64.7 0.390804597701149 34 12 39.1 0 3 104 2 35 HMV45442.1 hypothetical protein [Leptospiraceae bacterium] diamond 102 47.8 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae   Leptospiraceae bacterium
28544329 28544329 PRJNA1186363_P_NODE_35307_length_275_cov_1.000000_g34419_i0 PRJNA1186363 35307 275 1 2.75 Bacteria 2 Bacteria Bacteria 45.8 0.00443   NR WP_013253292.1 55206 g34419 i0 37.7 4.86545454545455 61 36 66.5 1 74 256 497 555 WP_013253292.1 phosphatidylinositol-specific phospholipase C domain-containing protein [Sediminispirochaeta smaragdinae] diamond 1338 46.2 0.991341991341991 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Spirochaetaceae Sediminispirochaeta Sediminispirochaeta smaragdinae
28619945 28619945 PRJNA1186363_P_NODE_29627_length_320_cov_0.902834_g28739_i0 PRJNA1186363 29627 320 0.902834 2.8890688 Leptospiraceae bacterium 2026757 Bacteria Bacteria 53.5 1.45e-5   NR MCB1169506.1 2026757 g28739 i0 33.7 1.884375 86 54 77.8 3 65 313 399 484 MCB1169506.1 hypothetical protein [Leptospiraceae bacterium] diamond 603 53.5 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae   Leptospiraceae bacterium
28808895 28808895 PRJNA1186363_P_NODE_36688_length_264_cov_1.445026_g35800_i0 PRJNA1186363 36688 264 1.445026 3.81486864 Spirochaetales bacterium 2026792 Bacteria Bacteria 44.7 0.00627   NR MBO4279211.1 2026792 g35800 i0 34.5 0.625 55 31 62.5 1 88 252 43 92 MBO4279211.1 TRAP transporter small permease subunit [Spirochaetales bacterium] diamond 165 44.7 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales     Spirochaetales bacterium
30862145 30862145 PRJNA1186363_P_NODE_23194_length_383_cov_1.438710_g22306_i0 PRJNA1186363 23194 383 1.43871 5.5102593 Spirochaetota bacterium 2202144 Bacteria Bacteria 45.4 0.0168   NR HOG64890.1 2202144 g22306 i0 48.9 0.704960835509138 45 23 35.2 0 239 373 226 270 HOG64890.1 hypothetical protein [Spirochaetota bacterium] diamond 270 45.4 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
31399696 31399696 PRJNA1186363_P_NODE_30276_length_314_cov_1.618257_g29388_i0 PRJNA1186363 30276 314 1.618257 5.08132698 Leptospiraceae bacterium 2026757 Bacteria Bacteria 95.1 1.07e-22   NR HNO26276.1 2026757 g29388 i0 77.1 0.668789808917197 70 13 65.9 2 247 41 54 121 HNO26276.1 hypothetical protein [Leptospiraceae bacterium] diamond 210 95.1 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae   Leptospiraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;