RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1186363", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA1186363 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27609482 27609482 PRJNA1186363_P_NODE_32744_length_294_cov_1.058824_g31856_i0 PRJNA1186363 32744 294 1.058824 3.11294256 Campylobacteraceae bacterium 2268179 Bacteria Bacteria 43.5 0.0355   NR NLK66967.1 2268179 g31856 i0 38.2 0.561224489795918 55 32 56.1 1 249 85 103 155 NLK66967.1 serine--tRNA ligase [Campylobacteraceae bacterium] diamond 165 43.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae   Campylobacteraceae bacterium
28808874 28808874 PRJNA1186363_P_NODE_27468_length_339_cov_1.466165_g26580_i0 PRJNA1186363 27468 339 1.466165 4.97029935 Campylobacter ureolyticus 827 Bacteria Bacteria 45.8 0.00819   NR WP_316372852.1 827 g26580 i0 27.6 1.85840707964602 105 60 91.2 5 14 322 24 114 WP_316372852.1 hypothetical protein, partial [Campylobacter ureolyticus] diamond 630 45.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter ureolyticus
29692969 29692969 PRJNA1186363_P_NODE_43910_length_242_cov_0.923077_g43022_i0 PRJNA1186363 43910 242 0.923077 2.23384634 unclassified Campylobacter 2593542 Bacteria Bacteria 106 3.42e-25   NR WP_150151323.1 2593542 g43022 i0 69 12.4338842975207 71 22 88 0 28 240 5 75 WP_150151323.1 MULTISPECIES: molecular chaperone DnaJ [unclassified Campylobacter] diamond 3009 106 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter  

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;