RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1186363", tax_kingdom = "Orthornavirae" and tax_phylum = "Kitrinoviricota"

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tax_superkingdom 1

tax_phylum 1

  • Kitrinoviricota · 2 ✖

tax_kingdom 1

  • Orthornavirae · 2 ✖

bioproject 1

  • PRJNA1186363 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5422948 5422948 PRJNA1186363_P_NODE_43325_length_243_cov_0.917647_g42437_i0 PRJNA1186363 43325 243 0.917647 2.22988221 Potexvirus trifolii 3433859 Viruses Viruses 405 1.46e-108   NTclustered gi|345645032|dbj|AB669182.1| 12188 g42437 i0 96.708 13.6172839506173 243 8 100 0 1 243 2511 2753 White clover mosaic virus genomic RNA, complete genome, strain: WClMV-RC blastn 3309 405 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus trifolii
14348859 14348859 PRJNA1186363_P_NODE_41432_length_247_cov_0.896552_g40544_i0 PRJNA1186363 41432 247 0.896552 2.21448344 Potexvirus trifolii 3433859 Viruses Viruses 396 8.95e-106   NTclustered gi|2520252303|gb|OQ993368.1| 12188 g40544 i0 95.547 8.99595141700405 247 11 100 0 1 247 684 930 White clover mosaic virus isolate DSMZ PV-1074, complete genome blastn 2222 396 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus trifolii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;