RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA1186363" and tax_clade = "delta/epsilon subdivisions"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA1186363 · 2 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29270128 29270128 PRJNA1186363_P_NODE_38269_length_253_cov_0.866667_g37381_i0 PRJNA1186363 38269 253 0.866667 2.19266751 Bacteria 2 Bacteria Bacteria 108 3.87e-25   NR OGQ23223.1 1797862 g37381 i0 72.7 5.70355731225296 77 18 91.3 1 253 23 424 497 OGQ23223.1 MAG: AMP-dependent synthetase [Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_44_16] diamond 1443 108 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_44_16
29996769 29996769 PRJNA1186363_P_NODE_38151_length_253_cov_1.722222_g37263_i0 PRJNA1186363 38151 253 1.722222 4.35722166 Actinomycetota 201174 Bacteria Bacteria 54.3 2.4e-6   NR MEE2717553.1 2024889 g37263 i0 55.6 4.10276679841897 45 20 53.4 0 138 4 1 45 MEE2717553.1 SDR family oxidoreductase [SAR324 cluster bacterium] diamond 1038 54.3 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;