RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1186363", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1186363 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28556803 28556803 PRJNA1186363_P_NODE_4167_length_1027_cov_1.302935_g3582_i0 PRJNA1186363 4167 1027 1.302935 13.38114245 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 48.5 0.0298   NR SPR02122.1 37360 g3582 i0 45.2 0.426484907497566 73 34 21.3 3 430 648 136 202 SPR02122.1 unnamed protein product [Plasmodiophora brassicae] diamond 438 48.5 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
30628277 30628277 PRJNA1186363_P_NODE_26413_length_349_cov_1.413043_g25525_i0 PRJNA1186363 26413 349 1.413043 4.93152007 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 139 1.39e-36   NR CEP01221.1 37360 g25525 i0 57.8 3.97134670487106 116 45 99.7 1 349 2 73 184 CEP01221.1 hypothetical protein PBRA_001827 [Plasmodiophora brassicae] diamond 1386 139 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;