RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1186363", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 6 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 6 ✖

bioproject 1

  • PRJNA1186363 · 6 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26882627 26882627 PRJNA1186363_P_NODE_31921_length_300_cov_1.713656_g31033_i0 PRJNA1186363 31921 300 1.713656 5.140968 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 63.9 2.61e-9   NR HMP82275.1 2026799 g31033 i0 62.5 0.97 48 18 48 0 299 156 216 263 HMP82275.1 kelch repeat-containing protein [Verrucomicrobiota bacterium] diamond 291 63.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
27660198 27660198 PRJNA1186363_P_NODE_18064_length_453_cov_1.350000_g17176_i0 PRJNA1186363 18064 453 1.35 6.1155 Verrucomicrobiota 74201 Bacteria Bacteria 130 5.57e-34   NR MEI7865572.1 2201154 g17176 i0 50 6.17218543046358 126 56 82.8 4 64 438 54 173 MEI7865572.1 polysaccharide deacetylase family protein [Chthoniobacterales bacterium] diamond 2796 130 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium
28366987 28366987 PRJNA1186363_P_NODE_14126_length_532_cov_1.592593_g13242_i0 PRJNA1186363 14126 532 1.592593 8.47259476 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 127 9.3e-32   NR MBP7975267.1 2026799 g13242 i0 60.8 1.15601503759399 97 37 54.7 1 1 291 53 148 MBP7975267.1 glycerophosphodiester phosphodiesterase [Verrucomicrobiota bacterium] diamond 615 127 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29175784 29175784 PRJNA1186363_P_NODE_42229_length_245_cov_0.906977_g41341_i0 PRJNA1186363 42229 245 0.906977 2.22209365 Pseudomonadati 3379134 Bacteria Bacteria 42.7 0.032   NR MCX6977575.1 2026799 g41341 i0 29.2 3.51428571428571 72 50 86.9 1 233 21 124 195 MCX6977575.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 861 43.1 0.990719257540603 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29648810 29648810 PRJNA1186363_P_NODE_38470_length_253_cov_0.866667_g37582_i0 PRJNA1186363 38470 253 0.866667 2.19266751 Pseudomonadati 3379134 Bacteria Bacteria 43.1 0.0291   NR MBI3877432.1 2026799 g37582 i0 29.9 1.81422924901186 77 52 88.9 2 13 237 74 150 MBI3877432.1 redoxin domain-containing protein [Verrucomicrobiota bacterium] diamond 459 43.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29787864 29787864 PRJNA1186363_P_NODE_43291_length_243_cov_0.917647_g42403_i0 PRJNA1186363 43291 243 0.917647 2.22988221 Opitutales bacterium 2026772 Bacteria Bacteria 44.3 0.0106   NR MFP4069785.1 2026772 g42403 i0 33.3 0.703703703703704 57 31 70.4 1 17 187 481 530 MFP4069785.1 alpha/beta fold hydrolase [Opitutales bacterium] diamond 171 44.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales     Opitutales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;