RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA1186363", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 3 ✖

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA1186363 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9247699 9247699 PRJNA1186363_P_NODE_34968_length_277_cov_1.529412_g34080_i0 PRJNA1186363 34968 277 1.529412 4.23647124 Copromyxa protea 931554 Tubulinea other_Eukaryota 265 3.0099999999999997e-66   NTclustered gi|1042160913|dbj|LC102263.1| 931554 g34080 i0 88.837 94.2671480144404 215 24 78 0 1 215 580 794 Copromyxa protea gene for actin, partial cds, strain: LUM_cl4 blastn 26112 265 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
13073362 13073362 PRJNA1186363_P_NODE_3451_length_1114_cov_1.741595_g2941_i0 PRJNA1186363 3451 1114 1.741595 19.4013683 Copromyxa protea 931554 Tubulinea other_Eukaryota 909 0   NTclustered gi|508737347|dbj|AB766053.1| 931554 g2941 i0 81.664 2.80520646319569 1118 184 99 16 1 1103 274 1385 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 3125 909 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
28872261 28872261 PRJNA1186363_P_NODE_24088_length_373_cov_1.720000_g23200_i0 PRJNA1186363 24088 373 1.72 6.4156 Chaos carolinense 160823 Tubulinea other_Eukaryota 222 2.1e-70   NR AFX73090.1 160823 g23200 i0 87.1 0.997319034852547 124 16 99.7 0 373 2 102 225 AFX73090.1 elongation factor 2 alpha, partial [Chaos carolinense] diamond 372 222 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Chaos Chaos carolinense

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;