RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1182301", tax_phylum = "Thermoproteota" and tax_superkingdom = "Archaea"

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tax_superkingdom 1

  • Archaea · 3 ✖

tax_phylum 1

  • Thermoproteota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1182301 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27514628 27514628 PRJNA1182301_P_NODE_29483_length_276_cov_1.256158_g29358_i0 PRJNA1182301 29483 276 1.256158 3.46699608 Thermoproteota archaeon 2056631 Archaea Archaea 119 3.3e-30   NR MDP8907050.1 2056631 g29358 i0 82.9 3.66304347826087 70 12 76.1 0 67 276 141 210 MDP8907050.1 EF-Tu/IF-2/RF-3 family GTPase [Thermoproteota archaeon] diamond 1011 119 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
28462025 28462025 PRJNA1182301_P_NODE_38986_length_263_cov_1.836842_g38861_i0 PRJNA1182301 38986 263 1.836842 4.83089446 Thermoproteota archaeon 2056631 Archaea Archaea 46.6 7.76e-4   NR MDQ3562092.1 2056631 g38861 i0 100 0.262357414448669 23 0 26.2 0 1 69 123 145 MDQ3562092.1 hypothetical protein [Thermoproteota archaeon] diamond 69 46.6 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
30166845 30166845 PRJNA1182301_P_NODE_35052_length_268_cov_2.184615_g34927_i0 PRJNA1182301 35052 268 2.184615 5.8547682 Pyrobaculum sp. 2004705 Archaea Archaea 101 9.58e-24   NR MEM4965092.1 2004705 g34927 i0 85 0.671641791044776 60 9 67.2 0 54 233 5 64 MEM4965092.1 hypothetical protein [Pyrobaculum sp.] diamond 180 101 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Pyrobaculum Pyrobaculum sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;