RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1182301", tax_kingdom = "Thermotogati" and tax_phylum = "Synergistota"

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tax_superkingdom 1

tax_phylum 1

  • Synergistota · 2 ✖

tax_kingdom 1

  • Thermotogati · 2 ✖

bioproject 1

  • PRJNA1182301 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4146214 4146214 PRJNA1182301_P_NODE_67344_length_227_cov_3.714286_g67219_i0 PRJNA1182301 67344 227 3.714286 8.43142922 uncultured Fretibacterium sp. 1678694 Bacteria Bacteria 152 1.8699999999999998e-42   NR WP_299300683.1 1678694 g67219 i0 97.3 2.97356828193833 75 2 99.1 0 227 3 287 361 WP_299300683.1 serine--tRNA ligase [uncultured Fretibacterium sp.] diamond 675 152 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium uncultured Fretibacterium sp.
32000465 32000465 PRJNA1182301_P_NODE_66258_length_232_cov_2.276730_g66133_i0 PRJNA1182301 66258 232 2.27673 5.2820136 Fretibacterium sp. OH122 2699746 Bacteria Bacteria 48.9 1.31e-4   NR WP_158612235.1 2491047 g66133 i0 61.9 0.543103448275862 42 13 54.3 2 99 224 1 39 WP_158612235.1 lecithin retinol acyltransferase family protein [Fretibacterium sp. OH1220_COT-178] diamond 126 48.9 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium sp. OH1220_COT-178

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;