RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1182301", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1182301 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5422230 5422230 PRJNA1182301_P_NODE_59265_length_244_cov_0.900585_g59140_i0 PRJNA1182301 59265 244 0.900585 2.1974274 Discostella sp. 2728207 SAR_Eukaryotes SAR_Eukaryotes 451 1.86e-122   NTclustered gi|2446660594|gb|OQ459326.1| 2728207 g59140 i0 100 99.9508196721311 244 0 100 0 1 244 258 15 Discostella sp. strain TL14 large subunit ribosomal RNA gene, partial sequence blastn 24388 451 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Discostella Discostella sp.
13795240 13795240 PRJNA1182301_P_NODE_66851_length_229_cov_3.782051_g66726_i0 PRJNA1182301 66851 229 3.782051 8.66089679 Pseudo-nitzschia multistriata 183589 SAR_Eukaryotes SAR_Eukaryotes 114 5.77e-28   NR VEU35301.1 183589 g66726 i0 63.2 0.995633187772926 76 28 99.6 0 228 1 171 246 VEU35301.1 unnamed protein product [Pseudo-nitzschia multistriata] diamond 228 114 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Pseudo-nitzschia Pseudo-nitzschia multistriata
28462033 28462033 PRJNA1182301_P_NODE_50386_length_250_cov_0.870056_g50261_i0 PRJNA1182301 50386 250 0.870056 2.17514 Cyclotella cryptica 29204 SAR_Eukaryotes SAR_Eukaryotes 67.4 2.59e-11   NR KAL3781824.1 29204 g50261 i0 86.7 0.54 45 6 54 0 248 114 164 208 KAL3781824.1 hypothetical protein HJC23_011133 [Cyclotella cryptica] diamond 135 67.4 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Cyclotella Cyclotella cryptica
29648779 29648779 PRJNA1182301_P_NODE_23910_length_283_cov_2.152381_g23785_i0 PRJNA1182301 23910 283 2.152381 6.09123823 Bacillariophyceae 33849 SAR_Eukaryotes SAR_Eukaryotes 118 4.98e-31   NR KAG7343752.1 303405 g23785 i0 58.7 2.88339222614841 92 38 97.5 0 3 278 81 172 KAG7343752.1 bifunctional methionine sulfoxide reductase [Nitzschia inconspicua] diamond 816 118 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Nitzschia Nitzschia inconspicua

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;