RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1182301", tax_clade = "Opisthokonta" and tax_phylum = "Mollusca"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA1182301 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7972243 7972243 PRJNA1182301_P_NODE_52967_length_248_cov_1.440000_g52842_i0 PRJNA1182301 52967 248 1.44 3.5712 Magallana angulata 2784310 Mollusca Mollusca 259 1.23e-64   NTclustered gi|2416880559|ref|XM_052856645.1| 2784310 g52842 i0 85.771 3.06048387096774 253 27 100 7 1 248 1066 818 PREDICTED: Crassostrea angulata uncharacterized LOC128186752 (LOC128186752), transcript variant X2, mRNA blastn 759 259 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Magallana Magallana angulata
13795122 13795122 PRJNA1182301_P_NODE_53891_length_247_cov_2.379310_g53766_i0 PRJNA1182301 53891 247 2.37931 5.8768957 Magallana 147004 Mollusca Mollusca 148 2.77e-31   NTclustered gi|2751312610|ref|XM_034471978.2| 29159 g53766 i0 86.667 48.8704453441296 135 16 54 2 3 136 1927 2060 PREDICTED: Magallana gigas uncharacterized protein (LOC117689821), mRNA blastn 12071 148 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Magallana Magallana gigas
29440323 29440323 PRJNA1182301_P_NODE_63350_length_241_cov_0.916667_g63225_i0 PRJNA1182301 63350 241 0.916667 2.20916747 Elysia marginata 1093978 Mollusca Mollusca 44.7 0.00791   NR GFS17153.1 1093978 g63225 i0 39.6 0.659751037344398 53 30 66 1 231 73 714 764 GFS17153.1 proteasome-associated protein ECM29-like protein, partial [Elysia marginata] diamond 159 44.7 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Plakobranchidae Elysia Elysia marginata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;