RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1182301", tax_clade = "FCB group" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 6 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 6 ✖

bioproject 1

  • PRJNA1182301 · 6 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1041900 1041900 PRJNA1182301_P_NODE_68901_length_196_cov_4.585366_g68776_i0 PRJNA1182301 68901 196 4.585366 8.98731736 Fibrobacterota bacterium 2052160 Bacteria Bacteria 82.4 1.97e-17   NR MEN9354344.1 2052160 g68776 i0 58.5 0.994897959183674 65 27 99.5 0 2 196 136 200 MEN9354344.1 hypothetical protein [Fibrobacterota bacterium] diamond 195 82.4 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium
26913960 26913960 PRJNA1182301_P_NODE_52322_length_248_cov_3.194286_g52197_i0 PRJNA1182301 52322 248 3.194286 7.92182928 Fibrobacter sp. UWB13 1896204 Bacteria Bacteria 45.1 0.00602   NR WP_085490532.1 1896204 g52197 i0 70.4 0.326612903225806 27 8 32.7 0 247 167 64 90 WP_085490532.1 BspA family leucine-rich repeat surface protein [Fibrobacter sp. UWB13] diamond 81 45.1 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp. UWB13
29080922 29080922 PRJNA1182301_P_NODE_12608_length_321_cov_1.479839_g12483_i0 PRJNA1182301 12608 321 1.479839 4.75028319 Pseudomonadati 3379134 Bacteria Bacteria 58.2 2.88e-7   NR WP_139829305.1 1896204 g12483 i0 64.9 1.41121495327103 37 13 34.6 0 314 204 244 280 WP_139829305.1 BspA family leucine-rich repeat surface protein [Fibrobacter sp. UWB13] diamond 453 58.2 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp. UWB13
29535327 29535327 PRJNA1182301_P_NODE_40610_length_261_cov_1.638298_g40485_i0 PRJNA1182301 40610 261 1.638298 4.27595778 Fibrobacter sp. UWT2 1896224 Bacteria Bacteria 66.6 1.58e-10   NR WP_083585378.1 1896224 g40485 i0 66 1.60919540229885 47 16 54 0 2 142 241 287 WP_083585378.1 BspA family leucine-rich repeat surface protein [Fibrobacter sp. UWT2] diamond 420 66.6 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp. UWT2
30767347 30767347 PRJNA1182301_P_NODE_3514_length_481_cov_1.982843_g3390_i0 PRJNA1182301 3514 481 1.982843 9.53747483 Fibrobacter sp. UWB7 1896206 Bacteria Bacteria 62 9.43e-8   NR WP_073442723.1 1896206 g3390 i0 81.8 0.205821205821206 33 6 20.6 0 319 221 637 669 WP_073442723.1 BspA family leucine-rich repeat surface protein [Fibrobacter sp. UWB7] diamond 99 62 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp. UWB7
32884711 32884711 PRJNA1182301_P_NODE_19700_length_289_cov_1.976852_g19575_i0 PRJNA1182301 19700 289 1.976852 5.71310228 Fibrobacteraceae bacterium 2652288 Bacteria Bacteria 169 1.22e-49   NR MBO5950800.1 2652288 g19575 i0 99 0.996539792387543 96 1 99.7 0 1 288 112 207 MBO5950800.1 flippase-like domain-containing protein [Fibrobacteraceae bacterium] diamond 288 169 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae   Fibrobacteraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;