RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1180292" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1180292 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15068971 15068971 PRJNA1180292_P_NODE_5552_length_296_cov_1.399103_g5420_i0 PRJNA1180292 5552 296 1.399103 4.14134488 Chaos 160821 Tubulinea other_Eukaryota 313 1.14e-80   NTclustered gi|421976368|gb|JQ519502.1| 160823 g5420 i0 88.76 77.3986486486486 258 25 86 4 42 296 857 1113 Chaos carolinense clone JG10.98 18S ribosomal RNA gene, partial sequence blastn 22910 313 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Chaos Chaos carolinense
17619072 17619072 PRJNA1180292_P_NODE_8434_length_252_cov_0.871508_g8302_i0 PRJNA1180292 8434 252 0.871508 2.19620016 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 460 3.2e-125   NTclustered gi|399764264|gb|JQ271775.1| 1215986 g8302 i0 99.603 68.7579365079365 252 1 100 0 1 252 933 1184 Tubulinea group 02 sp. 1HFKJ 18S ribosomal RNA gene, partial sequence blastn 17327 460 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 02 sp. 1HFKJ

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;