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contig_metadata

13 rows where bioproject = "PRJNA1180292" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 13 ✖

tax_clade 1

bioproject 1

  • PRJNA1180292 · 13 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4144746 4144746 PRJNA1180292_P_NODE_11884_length_244_cov_0.912281_g11752_i0 PRJNA1180292 11884 244 0.912281 2.22596564 Phytophthora infestans 4787 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.022   NTclustered gi|301095059|ref|XM_002896586.1| 403677 g11752 i0 96.774 0.127049180327869 31 1 13 0 206 236 182 152 Phytophthora infestans T30-4 uncharacterized protein (PITG_17785), partial mRNA blastn 31 52.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
13071480 13071480 PRJNA1180292_P_NODE_2271_length_452_cov_1.535620_g2139_i0 PRJNA1180292 2271 452 1.53562 6.9410024 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 128 2e-31   NR OQR88668.1 74557 g2139 i0 56.5 2.35619469026549 115 46 76.3 2 81 425 100 210 OQR88668.1 DEAD/DEAH box RNA helicase [Thraustotheca clavata] diamond 1065 129 0.992248062015504 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Thraustotheca Thraustotheca clavata
13071526 13071526 PRJNA1180292_P_NODE_7871_length_253_cov_0.866667_g7739_i0 PRJNA1180292 7871 253 0.866667 2.19266751 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.023   NTclustered gi|669166087|ref|XM_008620384.1| 1156394 g7739 i0 100 0.110671936758893 28 0 11 0 119 146 2518 2491 Saprolegnia diclina VS20 hypothetical protein mRNA blastn 28 52.8 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
21994487 21994487 PRJNA1180292_P_NODE_11298_length_246_cov_0.901734_g11166_i0 PRJNA1180292 11298 246 0.901734 2.21826564 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 139 1.66e-28   NTclustered gi|813142308|ref|XM_012343858.1| 695850 g11166 i0 92 2.55284552845528 100 7 41 1 4 103 890 988 Saprolegnia parasitica CBS 223.65 aspartate carbamoyltransferase mRNA blastn 628 139 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
21994570 21994570 PRJNA1180292_P_NODE_6798_length_270_cov_1.786802_g6666_i0 PRJNA1180292 6798 270 1.786802 4.8243654 Phytophthora infestans 4787 SAR_Eukaryotes SAR_Eukaryotes 187 6.4999999999999984e-43   NTclustered gi|2661441985|ref|XR_009934438.1| 403677 g6666 i0 94.355 45.9333333333333 124 4 46 3 55 178 1292 1412 Phytophthora infestans T30-4 28S ribosomal RNA (PITG_33044), partial rRNA blastn 12402 187 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
27609402 27609402 PRJNA1180292_P_NODE_11164_length_246_cov_0.901734_g11032_i0 PRJNA1180292 11164 246 0.901734 2.21826564 Phytophthora capsici 4784 SAR_Eukaryotes SAR_Eukaryotes 55.5 1.22e-6   NR KAG1704360.1 4784 g11032 i0 44.1 1.3780487804878 59 32 72 1 35 211 24 81 KAG1704360.1 hypothetical protein DVH05_006368 [Phytophthora capsici] diamond 339 55.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
27660183 27660183 PRJNA1180292_P_NODE_2444_length_435_cov_1.240331_g2312_i0 PRJNA1180292 2444 435 1.240331 5.39543985 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 153 8.719999999999999e-45   NR TMW61584.1 41045 g2312 i0 61.3 7.7448275862069 124 48 85.5 0 374 3 3 126 TMW61584.1 hypothetical protein Poli38472_012775 [Pythium oligandrum] diamond 3369 153 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
27798915 27798915 PRJNA1180292_P_NODE_10364_length_248_cov_0.891429_g10232_i0 PRJNA1180292 10364 248 0.891429 2.21074392 Lagenidium giganteum 4803 SAR_Eukaryotes SAR_Eukaryotes 67.8 6.07e-11   NR DAZ99581.1 4803 g10232 i0 63.6 0.665322580645161 55 16 61.7 1 92 244 37 91 DAZ99581.1 TPA: hypothetical protein N0F65_001409 [Lagenidium giganteum] diamond 165 67.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
28745951 28745951 PRJNA1180292_P_NODE_8087_length_253_cov_0.866667_g7955_i0 PRJNA1180292 8087 253 0.866667 2.19266751 Phytophthora citrophthora 4793 SAR_Eukaryotes SAR_Eukaryotes 43.1 0.03   NR KAK1934529.1 4793 g7955 i0 44.4 0.533596837944664 45 24 53.4 1 137 3 56 99 KAK1934529.1 Protein-glutamate O-methyltransferase C1393.13 [Phytophthora citrophthora] diamond 135 43.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora citrophthora
30767330 30767330 PRJNA1180292_P_NODE_10914_length_246_cov_1.595376_g10782_i0 PRJNA1180292 10914 246 1.595376 3.92462496 Globisporangium splendens 82926 SAR_Eukaryotes SAR_Eukaryotes 75.1 1.64e-13   NR KAF1318798.1 82926 g10782 i0 54.5 1.68292682926829 66 29 79.3 1 207 13 52 117 KAF1318798.1 Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase, partial [Globisporangium splendens] diamond 414 75.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium splendens
31368013 31368013 PRJNA1180292_P_NODE_5236_length_304_cov_2.086580_g5104_i0 PRJNA1180292 5236 304 2.08658 6.3432032 Lagenidium giganteum 4803 SAR_Eukaryotes SAR_Eukaryotes 95.9 1.2e-20   NR DAZ93756.1 4803 g5104 i0 54.5 2.37828947368421 77 35 76 0 4 234 300 376 DAZ93756.1 TPA: hypothetical protein N0F65_000599 [Lagenidium giganteum] diamond 723 95.9 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
32538552 32538552 PRJNA1180292_P_NODE_6539_length_275_cov_1.544554_g6407_i0 PRJNA1180292 6539 275 1.544554 4.2475235 Phytophthora kernoviae 325452 SAR_Eukaryotes SAR_Eukaryotes 58.9 5.43e-9   NR KAF4318810.1 1284355 g6407 i0 45.5 0.84 77 40 81.8 2 269 45 1 77 KAF4318810.1 hypothetical protein G195_007779 [Phytophthora kernoviae 00238/432] diamond 231 58.9 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora kernoviae
32746500 32746500 PRJNA1180292_P_NODE_6200_length_282_cov_1.468900_g6068_i0 PRJNA1180292 6200 282 1.4689 4.142298 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 66.6 2.33e-10   NR POM69094.1 4796 g6068 i0 42.5 3.70212765957447 87 43 92.6 1 261 1 269 348 POM69094.1 Crinkler (CRN) family protein [Phytophthora palmivora] diamond 1044 66.6 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora palmivora

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;