RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1180292" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1180292 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28619857 28619857 PRJNA1180292_P_NODE_10727_length_247_cov_0.896552_g10595_i0 PRJNA1180292 10727 247 0.896552 2.21448344 Chlamydiota bacterium 2081524 Bacteria Bacteria 59.7 7.4e-9   NR MCX6989804.1 2081524 g10595 i0 48.9 0.546558704453441 45 23 54.7 0 3 137 94 138 MCX6989804.1 DoxX family membrane protein [Chlamydiota bacterium] diamond 135 59.7 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
30262017 30262017 PRJNA1180292_P_NODE_11432_length_245_cov_0.906977_g11300_i0 PRJNA1180292 11432 245 0.906977 2.22209365 Rhabdochlamydiaceae bacterium 2047756 Bacteria Bacteria 44.3 0.0112   NR MBX9924202.1 2047756 g11300 i0 42.4 2.03265306122449 59 32 72.2 1 181 5 945 1001 MBX9924202.1 leucine-rich repeat protein [Rhabdochlamydiaceae bacterium] diamond 498 44.3 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium
32253871 32253871 PRJNA1180292_P_NODE_10538_length_247_cov_0.896552_g10406_i0 PRJNA1180292 10538 247 0.896552 2.21448344 Chlamydiales bacterium 2047757 Bacteria Bacteria 132 3.56e-35   NR HSX10760.1 2047757 g10406 i0 70.7 1.97975708502024 82 24 99.6 0 2 247 226 307 HSX10760.1 tRNA 2-thiouridine(34) synthase MnmA [Chlamydiales bacterium] diamond 489 132 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;