RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1180292", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1180292 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11796508 11796508 PRJNA1180292_P_NODE_5310_length_302_cov_2.187773_g5178_i0 PRJNA1180292 5310 302 2.187773 6.60707446 Plasmodium vinckei 5860 SAR_Eukaryotes SAR_Eukaryotes 250 9.29e-62   NTclustered gi|669195261|ref|XM_008624420.1| 54757 g5178 i0 82.979 55.2218543046358 282 42 92 6 2 280 853 1131 Plasmodium vinckei vinckei actin II, putative (PVVCY_1406140), partial mRNA blastn 16677 250 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium vinckei
11796511 11796511 PRJNA1180292_P_NODE_5450_length_299_cov_1.380531_g5318_i0 PRJNA1180292 5450 299 1.380531 4.12778769 Cystoisospora suis 483139 SAR_Eukaryotes SAR_Eukaryotes 157 8.72e-44   NR XP_067925815.1 483139 g5318 i0 76 2.98996655518395 100 23 99.3 1 298 2 295 394 XP_067925815.1 preprotein subunit [Cystoisospora suis] diamond 894 157 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Cystoisospora Cystoisospora suis
16895001 16895001 PRJNA1180292_P_NODE_5794_length_290_cov_1.110599_g5662_i0 PRJNA1180292 5794 290 1.110599 3.2207371 Babesia ovata 189622 SAR_Eukaryotes SAR_Eukaryotes 165 3.31e-36   NTclustered gi|1624694795|ref|XM_029012269.1| 189622 g5662 i0 80.083 21.8793103448276 241 33 81 9 32 266 139 370 Babesia ovata 60S ribosomal protein L44 (BOVATA_033520), partial mRNA blastn 6345 165 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia ovata
32809390 32809390 PRJNA1180292_P_NODE_3900_length_348_cov_1.134545_g3768_i0 PRJNA1180292 3900 348 1.134545 3.9482166 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 138 2.44e-39   NR CAL7857429.1 1344799 g3768 i0 64.9 11.7758620689655 97 34 83.6 0 58 348 3 99 CAL7857429.1 unnamed protein product [Sarcocystis calchasi] diamond 4098 139 0.992805755395683 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Sarcocystis Sarcocystis calchasi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;