RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA1180292", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 8 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 8 ✖

bioproject 1

  • PRJNA1180292 · 8 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26723544 26723544 PRJNA1180292_P_NODE_10801_length_247_cov_0.896552_g10669_i0 PRJNA1180292 10801 247 0.896552 2.21448344 Lentisphaerota bacterium 1932692 Bacteria Bacteria 134 2.49e-34   NR MBM4154594.1 1932692 g10669 i0 81.7 1.9919028340081 82 15 99.6 0 2 247 501 582 MBM4154594.1 DUF4838 domain-containing protein [Lentisphaerota bacterium] diamond 492 134 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
27072175 27072175 PRJNA1180292_P_NODE_5022_length_310_cov_1.974684_g4890_i0 PRJNA1180292 5022 310 1.974684 6.1215204 Lentisphaeria bacterium 2053569 Bacteria Bacteria 152 2.05e-43   NR MCJ8329033.1 2053569 g4890 i0 70.9 0.996774193548387 103 30 99.7 0 309 1 23 125 MCJ8329033.1 HpcH/HpaI aldolase/citrate lyase family protein [Lentisphaeria bacterium] diamond 309 152 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium
29503613 29503613 PRJNA1180292_P_NODE_12490_length_243_cov_0.917647_g12358_i0 PRJNA1180292 12490 243 0.917647 2.22988221 Lentisphaerota bacterium 1932692 Bacteria Bacteria 154 1.9e-43   NR NLX24879.1 1932692 g12358 i0 88.8 4.9382716049382704 80 9 98.8 0 2 241 199 278 NLX24879.1 ATP-binding protein [Lentisphaerota bacterium] diamond 1200 154 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
29756192 29756192 PRJNA1180292_P_NODE_8251_length_252_cov_0.871508_g8119_i0 PRJNA1180292 8251 252 0.871508 2.19620016 Lentisphaerota bacterium 1932692 Bacteria Bacteria 97.4 2.42e-21   NR MBM4164466.1 1932692 g8119 i0 61.3 0.952380952380952 80 31 95.2 0 11 250 223 302 MBM4164466.1 FtsX-like permease family protein [Lentisphaerota bacterium] diamond 240 97.4 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
30735654 30735654 PRJNA1180292_P_NODE_10214_length_248_cov_0.891429_g10082_i0 PRJNA1180292 10214 248 0.891429 2.21074392 Lentisphaeria bacterium 2053569 Bacteria Bacteria 95.5 1.07e-20   NR MBN2450781.1 2053569 g10082 i0 59 2.89112903225806 78 32 94.4 0 240 7 410 487 MBN2450781.1 GreA/GreB family elongation factor [Lentisphaeria bacterium] diamond 717 95.5 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium
30767331 30767331 PRJNA1180292_P_NODE_11134_length_246_cov_0.901734_g11002_i0 PRJNA1180292 11134 246 0.901734 2.21826564 Lentisphaerota bacterium 1932692 Bacteria Bacteria 87.8 4.86e-18   NR MFH0879217.1 1932692 g11002 i0 56.3 0.975609756097561 80 35 97.6 0 7 246 72 151 MFH0879217.1 sigma 54-interacting transcriptional regulator [Lentisphaerota bacterium] diamond 240 87.8 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
32000422 32000422 PRJNA1180292_P_NODE_10338_length_248_cov_0.891429_g10206_i0 PRJNA1180292 10338 248 0.891429 2.21074392 Lentisphaerae bacterium ADurb.BinA184 1852901 Bacteria Bacteria 127 8.540000000000001e-33   NR OPZ26597.1 1852901 g10206 i0 65.9 0.991935483870968 82 28 99.2 0 247 2 38 119 OPZ26597.1 MAG: hypothetical protein BWZ02_01953 [Lentisphaerae bacterium ADurb.BinA184] diamond 246 127 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerae bacterium ADurb.BinA184
32190344 32190344 PRJNA1180292_P_NODE_10198_length_248_cov_0.891429_g10066_i0 PRJNA1180292 10198 248 0.891429 2.21074392 Lentisphaerota bacterium 1932692 Bacteria Bacteria 105 2.4399999999999997e-24   NR MBM4148156.1 1932692 g10066 i0 68.3 0.991935483870968 82 26 99.2 0 248 3 70 151 MBM4148156.1 hypothetical protein [Lentisphaerota bacterium] diamond 246 105 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;