RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1180292", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA1180292 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18169477 18169477 PRJNA1180292_P_NODE_12975_length_242_cov_0.923077_g12843_i0 PRJNA1180292 12975 242 0.923077 2.23384634 Rhodothermales bacterium 2306054 Bacteria Bacteria 145 5.96e-39   NR MDX1741516.1 2306054 g12843 i0 88.8 0.991735537190083 80 9 99.2 0 242 3 192 271 MDX1741516.1 multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [Rhodothermales bacterium] diamond 240 145 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium
29333445 29333445 PRJNA1180292_P_NODE_5949_length_287_cov_1.093458_g5817_i0 PRJNA1180292 5949 287 1.093458 3.13822446 Pseudomonadati 3379134 Bacteria Bacteria 113 6.020000000000001e-27   NR WP_211214090.1 503170 g5817 i0 65.9 1.8397212543554 88 29 92 1 286 23 291 377 WP_211214090.1 S8 family peptidase [Salisaeta longa] diamond 528 113 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Salisaetaceae Salisaeta Salisaeta longa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;