RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1180292", tax_clade = "Bacteria candidate phyla" and tax_phylum = "candidate division WOR-3"

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tax_superkingdom 1

tax_phylum 1

  • candidate division WOR-3 · 2 ✖

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA1180292 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31968715 31968715 PRJNA1180292_P_NODE_12898_length_242_cov_0.923077_g12766_i0 PRJNA1180292 12898 242 0.923077 2.23384634 candidate division WOR-3 bacterium 2052148 Bacteria Bacteria 96.3 1.18e-22   NR MBN2464596.1 2052148 g12766 i0 60 4.94628099173554 80 32 99.2 0 240 1 98 177 MBN2464596.1 nucleotidyltransferase domain-containing protein [candidate division WOR-3 bacterium] diamond 1197 96.3 1 Bacteria Bacteria candidate phyla   candidate division WOR-3         candidate division WOR-3 bacterium
32538555 32538555 PRJNA1180292_P_NODE_8299_length_252_cov_0.871508_g8167_i0 PRJNA1180292 8299 252 0.871508 2.19620016 candidate division WOR-3 bacterium 2052148 Bacteria Bacteria 119 3.39e-30   NR MCK4529383.1 2052148 g8167 i0 66.3 2.96428571428571 83 28 98.8 0 250 2 38 120 MCK4529383.1 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase [candidate division WOR-3 bacterium] diamond 747 119 1 Bacteria Bacteria candidate phyla   candidate division WOR-3         candidate division WOR-3 bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;