RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1174770", tax_phylum = "Campylobacterota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1174770 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15068717 15068717 PRJNA1174770_P_NODE_5752_length_194_cov_1.524138_g5663_i0 PRJNA1174770 5752 194 1.524138 2.95682772 Bacteria 2 Bacteria Bacteria 359 8.809999999999999e-95   NTclustered gi|2323232558|gb|CP109813.1| 195 g5663 i0 100 375.061855670103 194 0 100 0 1 194 554069 553876 Campylobacter coli strain CC20JX12 chromosome, complete genome blastn 72762 359 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli
18167879 18167879 PRJNA1174770_P_NODE_11575_length_163_cov_0.903509_g11486_i0 PRJNA1174770 11575 163 0.903509 1.47271967 Campylobacter concisus 199 Bacteria Bacteria 285 1.23e-72   NTclustered gi|1376251231|gb|CP021642.1| 199 g11486 i0 98.16 19.638036809816 163 3 100 0 1 163 1350066 1349904 Campylobacter concisus strain P2CDO4 chromosome, complete genome blastn 3201 285 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus
31683901 31683901 PRJNA1174770_P_NODE_9497_length_166_cov_0.888889_g9408_i0 PRJNA1174770 9497 166 0.888889 1.47555574 Helicobacter pylori 210 Bacteria Bacteria 48.1 1.44e-5   NR GAA8854446.1 210 g9408 i0 63.9 1.30120481927711 36 13 65.1 0 10 117 4 39 GAA8854446.1 hypothetical protein Kyoto154A_1380 [Helicobacter pylori] diamond 216 48.1 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;