RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1174770", tax_clade = "Cyanobacteriota/Melainabacteria group" and tax_phylum = "Cyanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Cyanobacteriota · 3 ✖

tax_kingdom 1

tax_clade 1

  • Cyanobacteriota/Melainabacteria group · 3 ✖

bioproject 1

  • PRJNA1174770 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27546167 27546167 PRJNA1174770_P_NODE_11504_length_163_cov_0.903509_g11415_i0 PRJNA1174770 11504 163 0.903509 1.47271967 Cyanobacteria bacterium RM1_2_2 2720432 Bacteria Bacteria 62 1.39e-9   NR NJO79369.1 2720432 g11415 i0 96.9 0.588957055214724 32 1 58.9 0 68 163 1 32 NJO79369.1 hypothetical protein [Cyanobacteria bacterium RM1_2_2] diamond 96 62 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota         Cyanobacteria bacterium RM1_2_2
28114333 28114333 PRJNA1174770_P_NODE_8825_length_167_cov_0.881356_g8736_i0 PRJNA1174770 8825 167 0.881356 1.47186452 Cyanobacteria bacterium PR.3.49 2067978 Bacteria Bacteria 119 3.829999999999999e-31   NR MBA3857364.1 2067978 g8736 i0 100 0.988023952095808 55 0 98.8 0 167 3 101 155 MBA3857364.1 hypothetical protein [Cyanobacteria bacterium PR.3.49] diamond 165 119 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota         Cyanobacteria bacterium PR.3.49
32317149 32317149 PRJNA1174770_P_NODE_12259_length_162_cov_0.911504_g12170_i0 PRJNA1174770 12259 162 0.911504 1.47663648 Cyanobium sp. A2C-AMD 2823695 Bacteria Bacteria 41.2 0.041   NR WP_255017014.1 2823695 g12170 i0 45.5 0.611111111111111 33 18 61.1 0 137 39 165 197 WP_255017014.1 tyrosine-type recombinase/integrase [Cyanobium sp. A2C-AMD] diamond 99 41.2 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Cyanobium Cyanobium sp. A2C-AMD

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;