RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1174770", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Saccharimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Saccharimonadota · 6 ✖

tax_clade 1

  • Bacteria candidate phyla · 6 ✖

bioproject 1

  • PRJNA1174770 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19442323 19442323 PRJNA1174770_P_NODE_8036_length_169_cov_0.866667_g7947_i0 PRJNA1174770 8036 169 0.866667 1.46466723 Candidatus Nanosynbacter sp. HMT-352 2899133 Bacteria Bacteria 274 2.7699999999999997e-69   NTclustered gi|2218409810|gb|CP089289.1| 2899133 g7947 i0 96.407 0.988165680473373 167 5 99 1 3 169 730241 730076 Candidatus Nanosynbacter sp. HMT-352 strain TM7-072 chromosome blastn 167 274 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Nanosynbacterales Candidatus Nanosynbacteraceae Candidatus Nanosynbacter Candidatus Nanosynbacter sp. HMT-352
27735929 27735929 PRJNA1174770_P_NODE_7904_length_169_cov_0.866667_g7815_i0 PRJNA1174770 7904 169 0.866667 1.46466723 TM7 phylum sp. oral taxon 346 713049 Bacteria Bacteria 107 1.54e-25   NR TWP26302.1 713049 g7815 i0 98.2 0.994082840236686 56 1 99.4 0 169 2 402 457 TWP26302.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB [TM7 phylum sp. oral taxon 346] diamond 168 107 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         TM7 phylum sp. oral taxon 346
29377420 29377420 PRJNA1174770_P_NODE_10249_length_165_cov_0.887931_g10160_i0 PRJNA1174770 10249 165 0.887931 1.46508615 Candidatus Saccharimonas sp. 1917697 Bacteria Bacteria 115 5.03e-29   NR RKV99771.1 1917697 g10160 i0 98.1 1.96363636363636 54 1 98.2 0 164 3 2 55 RKV99771.1 MAG: glycosyltransferase family 1 protein [Candidatus Saccharimonas sp.] diamond 324 115 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales Candidatus Saccharimonadaceae Candidatus Saccharimonas Candidatus Saccharimonas sp.
29396574 29396574 PRJNA1174770_P_NODE_9589_length_166_cov_0.880342_g9500_i0 PRJNA1174770 9589 166 0.880342 1.46136772 Candidatus Saccharimonas 1331051 Bacteria Bacteria 58.5 7.94e-9   NR RKW02597.1 1917697 g9500 i0 97 1.19277108433735 33 1 59.6 0 101 3 1 33 RKW02597.1 MAG: virulence factor MviN, partial [Candidatus Saccharimonas sp.] diamond 198 58.5 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales Candidatus Saccharimonadaceae Candidatus Saccharimonas Candidatus Saccharimonas sp.
31576840 31576840 PRJNA1174770_P_NODE_11776_length_162_cov_1.823009_g11687_i0 PRJNA1174770 11776 162 1.823009 2.95327458 Candidatus Nanosynbacter 2093823 Bacteria Bacteria 109 2.77e-26   NR MBB1560059.1 2026720 g11687 i0 100 1.96296296296296 53 0 98.1 0 161 3 142 194 MBB1560059.1 S8 family serine peptidase [Candidatus Saccharibacteria bacterium] diamond 318 109 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
32348706 32348706 PRJNA1174770_P_NODE_8839_length_167_cov_0.881356_g8750_i0 PRJNA1174770 8839 167 0.881356 1.47186452 TM7 phylum sp. oral taxon 349 713051 Bacteria Bacteria 79.3 1.79e-16   NR TWP24131.1 713051 g8750 i0 78.8 0.934131736526946 52 7 86.2 1 146 3 1 52 TWP24131.1 IS30 family transposase [TM7 phylum sp. oral taxon 349] diamond 156 79.3 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         TM7 phylum sp. oral taxon 349

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;