RNAquarium Metadata Server
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contig_metadata

37 rows where bioproject = "PRJNA1174234", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 37 ✖

tax_phylum 1

  • Myxococcota · 37 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1174234 · 37 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1590840 1590840 PRJNA1174234_P_NODE_5802_length_564_cov_1.248473_g5606_i0 PRJNA1174234 5802 564 1.248473 7.04138772 Myxococcales bacterium 2026763 Bacteria Bacteria 262 2.5400000000000002e-86   NR MCA9553765.1 2026763 g5606 i0 65.9 7.63829787234043 179 61 95.2 0 538 2 1 179 MCA9553765.1 superoxide dismutase [Myxococcales bacterium] diamond 4308 262 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
4143036 4143036 PRJNA1174234_P_NODE_2624_length_794_cov_3.194175_g2456_i0 PRJNA1174234 2624 794 3.194175 25.3617495 Nannocystis punicea 2995304 Bacteria Bacteria 357 1.51e-93   NTclustered gi|2415023655|gb|CP114040.1| 2995304 g2456 i0 82.367 52.1448362720403 431 56 54 14 34 459 5377565 5377150 Nannocystis poenicansa strain FL3 chromosome, complete genome blastn 41403 357 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Nannocystis Nannocystis punicea
8693900 8693900 PRJNA1174234_P_NODE_26007_length_269_cov_1.178571_g25811_i0 PRJNA1174234 26007 269 1.178571 3.17035599 Corallococcus 83461 Bacteria Bacteria 497 2.63e-136   NTclustered gi|1561763003|gb|CP034669.1| 184914 g25811 i0 100 240.921933085502 269 0 100 0 1 269 144314 144046 Corallococcus coralloides strain B035 chromosome, complete genome blastn 64808 497 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus coralloides
12519616 12519616 PRJNA1174234_P_NODE_33290_length_245_cov_0.877907_g33094_i0 PRJNA1174234 33290 245 0.877907 2.15087215 Myxococcus 32 Bacteria Bacteria 135 2.13e-27   NTclustered gi|2869653495|gb|CP175551.1| 33 g33094 i0 88.393 13.7183673469388 112 13 46 0 131 242 8711847 8711736 Myxococcus fulvus strain KYC1117 chromosome, complete genome blastn 3361 135 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus fulvus
13069784 13069784 PRJNA1174234_P_NODE_4071_length_660_cov_15.229983_g3883_i0 PRJNA1174234 4071 660 15.229983 100.5178878 Nannocystaceae bacterium 2545255 Bacteria Bacteria 273 1.8499999999999999e-90   NR MEZ4451588.1 2545255 g3883 i0 75.4 1.54090909090909 167 41 75.9 0 55 555 5 171 MEZ4451588.1 peptidylprolyl isomerase [Nannocystaceae bacterium] diamond 1017 273 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae   Nannocystaceae bacterium
14345033 14345033 PRJNA1174234_P_NODE_14512_length_361_cov_3.138889_g14316_i0 PRJNA1174234 14512 361 3.138889 11.33138929 Pendulispora rubella 2741070 Bacteria Bacteria 115 4.3e-21   NTclustered gi|2698045512|gb|CP089929.1| 2741070 g14316 i0 85.981 30.0969529085873 107 15 30 0 73 179 10631087 10630981 Pendulispora rubella strain MSr11368 chromosome, complete genome blastn 10865 115 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora rubella
15068625 15068625 PRJNA1174234_P_NODE_2292_length_841_cov_2.667969_g2130_i0 PRJNA1174234 2292 841 2.667969 22.43761929 Sorangium 39643 Bacteria Bacteria 819 0   NTclustered gi|1338588479|gb|CP012673.1| 56 g2130 i0 84.271 123.378121284185 871 103 100 24 1 841 3449746 3448880 Sorangium cellulosum strain So ce26 chromosome, complete genome blastn 103761 822 0.996350364963504 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
16893195 16893195 PRJNA1174234_P_NODE_2294_length_841_cov_2.299479_g2132_i0 PRJNA1174234 2294 841 2.299479 19.33861839 Chondromyces crocatus 52 Bacteria Bacteria 1037 0   NTclustered gi|908353314|gb|CP012159.1| 52 g2132 i0 88.915 127.193816884661 848 85 100 8 1 841 1430422 1431267 Chondromyces crocatus strain Cm c5, complete genome blastn 106970 1037 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Chondromyces Chondromyces crocatus
20717550 20717550 PRJNA1174234_P_NODE_35837_length_241_cov_0.916667_g35641_i0 PRJNA1174234 35837 241 0.916667 2.20916747 Corallococcus interemptor 2316720 Bacteria Bacteria 272 1.5299999999999999e-68   NTclustered gi|2809283937|gb|CP102579.1| 2316720 g35641 i0 88.382 20.4522821576763 241 9 100 9 1 241 6155785 6156006 Corallococcus interemptor strain YZPH-2 chromosome, complete genome blastn 4929 272 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus interemptor
20717556 20717556 PRJNA1174234_P_NODE_3957_length_670_cov_1.432161_g3769_i0 PRJNA1174234 3957 670 1.432161 9.5954787 Archangium gephyra 48 Bacteria Bacteria 62.1 1.11e-4   NTclustered gi|2809295724|gb|CP102578.1| 48 g3769 i0 91.304 0.0686567164179104 46 3 7 1 562 607 6450893 6450849 Archangium gephyra strain SDU49 chromosome, complete genome blastn 46 62.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium gephyra
22717839 22717839 PRJNA1174234_P_NODE_23998_length_281_cov_1.288462_g23802_i0 PRJNA1174234 23998 281 1.288462 3.62057822 Bacteria 2 Bacteria Bacteria 156 2.16e-45   NR MBA3457357.1 2026735 g23802 i0 88.9 1.94306049822064 90 10 96.1 0 271 2 23 112 MBA3457357.1 ABC transporter permease [Deltaproteobacteria bacterium] diamond 546 157 0.993630573248408 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
23993112 23993112 PRJNA1174234_P_NODE_27039_length_262_cov_1.857143_g26843_i0 PRJNA1174234 27039 262 1.857143 4.86571466 Stigmatella 40 Bacteria Bacteria 479 9.249999999999999e-131   NTclustered gi|343198889|ref|NR_043951.1| 41 g26843 i0 99.618 112.950381679389 262 1 100 0 1 262 690 429 Stigmatella aurantiaca strain ATCC 25190 16S ribosomal RNA, partial sequence blastn 29593 479 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Stigmatella Stigmatella aurantiaca
26787465 26787465 PRJNA1174234_P_NODE_22521_length_291_cov_0.963303_g22325_i0 PRJNA1174234 22521 291 0.963303 2.80321173 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 129 2.45e-33   NR MBW1877613.1 2026735 g22325 i0 65.2 2.92783505154639 92 32 94.8 0 290 15 193 284 MBW1877613.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 852 129 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
26945488 26945488 PRJNA1174234_P_NODE_22022_length_294_cov_1.389140_g21826_i0 PRJNA1174234 22022 294 1.38914 4.0840716 Myxococcaceae bacterium 2484252 Bacteria Bacteria 94 5.25e-22   NR RYZ15473.1 2484252 g21826 i0 56.2 0.908163265306122 89 39 90.8 0 26 292 17 105 RYZ15473.1 MAG: ankyrin repeat domain-containing protein [Myxococcaceae bacterium] diamond 267 94 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
27154136 27154136 PRJNA1174234_P_NODE_30302_length_249_cov_0.875000_g30106_i0 PRJNA1174234 30302 249 0.875 2.17875 Bacteria 2 Bacteria Bacteria 102 4.14e-23   NR MBM4268004.1 2026735 g30106 i0 57.3 5.97590361445783 82 35 98.8 0 1 246 375 456 MBM4268004.1 hydroxymethylglutaryl-CoA synthase [Deltaproteobacteria bacterium] diamond 1488 103 0.990291262135922 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27230116 27230116 PRJNA1174234_P_NODE_14343_length_363_cov_2.224138_g14147_i0 PRJNA1174234 14343 363 2.224138 8.07362094 Myxococcales bacterium 2026763 Bacteria Bacteria 59.7 1.81e-7   NR MBT9557052.1 2026763 g14147 i0 32.1 0.925619834710744 112 61 92.6 4 22 357 1167 1263 MBT9557052.1 hypothetical protein [Myxococcales bacterium] diamond 336 59.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
27261951 27261951 PRJNA1174234_P_NODE_7643_length_495_cov_2.855450_g7447_i0 PRJNA1174234 7643 495 2.85545 14.1344775 Polyangiaceae bacterium 2268199 Bacteria Bacteria 61.6 1.04e-7   NR NUO48127.1 2268199 g7447 i0 33.1 1.94545454545455 160 103 95.8 4 494 21 185 342 NUO48127.1 NAD(P)-dependent alcohol dehydrogenase [Polyangiaceae bacterium] diamond 963 61.6 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
27420076 27420076 PRJNA1174234_P_NODE_34083_length_243_cov_0.905882_g33887_i0 PRJNA1174234 34083 243 0.905882 2.20129326 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 77 3.12e-16   NR MBW1916241.1 2026735 g33887 i0 44.3 1.95061728395062 79 43 96.3 1 2 235 15 93 MBW1916241.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 474 77 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27609364 27609364 PRJNA1174234_P_NODE_28364_length_255_cov_1.181319_g28168_i0 PRJNA1174234 28364 255 1.181319 3.01236345 Polyangiaceae bacterium 2268199 Bacteria Bacteria 60.5 1.88e-8   NR MFO0565523.1 2268199 g28168 i0 43.4 2.71764705882353 76 36 88.2 2 248 24 159 228 MFO0565523.1 endonuclease/exonuclease/phosphatase family protein [Polyangiaceae bacterium] diamond 693 60.5 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
27672559 27672559 PRJNA1174234_P_NODE_15744_length_348_cov_1.872727_g15548_i0 PRJNA1174234 15744 348 1.872727 6.51708996 Sandaracinaceae bacterium 2510337 Bacteria Bacteria 51.2 1.34e-4   NR MCB9661409.1 2510337 g15548 i0 63.9 0.577586206896552 36 12 30.2 1 3 107 728 763 MCB9661409.1 hypothetical protein [Sandaracinaceae bacterium] diamond 201 51.2 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Sandaracinaceae   Sandaracinaceae bacterium
27849280 27849280 PRJNA1174234_P_NODE_26244_length_267_cov_1.706186_g26048_i0 PRJNA1174234 26244 267 1.706186 4.55551662 Bacteria 2 Bacteria Bacteria 47 0.00134   NR MBI5903351.1 2026735 g26048 i0 29.5 4.76404494382022 78 53 85.4 1 240 13 82 159 MBI5903351.1 SIMPL domain-containing protein [Deltaproteobacteria bacterium] diamond 1272 47 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27975708 27975708 PRJNA1174234_P_NODE_20345_length_306_cov_1.321888_g20149_i0 PRJNA1174234 20345 306 1.321888 4.04497728 Pseudomonadati 3379134 Bacteria Bacteria 118 5.23e-31   NR NLN63596.1 2026763 g20149 i0 63.9 2.91176470588235 97 35 95.1 0 292 2 24 120 NLN63596.1 NAD(P)H:quinone oxidoreductase [Myxococcales bacterium] diamond 891 118 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
28366906 28366906 PRJNA1174234_P_NODE_29746_length_250_cov_0.870056_g29550_i0 PRJNA1174234 29746 250 0.870056 2.17514 Polyangiaceae bacterium 2268199 Bacteria Bacteria 53.5 6.25e-6   NR MFO0613594.1 2268199 g29550 i0 48.5 3.408 66 33 79.2 1 249 52 255 319 MFO0613594.1 serine/threonine-protein kinase [Polyangiaceae bacterium] diamond 852 53.5 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
28588255 28588255 PRJNA1174234_P_NODE_27127_length_262_cov_1.211640_g26931_i0 PRJNA1174234 27127 262 1.21164 3.1744968 Archangium sp. 1872627 Bacteria Bacteria 64.3 1.17e-9   NR WP_329733833.1 1872627 g26931 i0 58.3 0.549618320610687 48 20 55 0 6 149 17 64 WP_329733833.1 kelch repeat-containing protein [Archangium sp.] diamond 144 64.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium sp.
28619811 28619811 PRJNA1174234_P_NODE_27807_length_258_cov_1.248649_g27611_i0 PRJNA1174234 27807 258 1.248649 3.22151442 Pyxidicoccus fallax 394095 Bacteria Bacteria 95.1 5.91e-22   NR WP_169349892.1 394095 g27611 i0 54.2 0.965116279069767 83 37 96.5 1 253 5 103 184 WP_169349892.1 maleylacetoacetate isomerase [Pyxidicoccus fallax] diamond 249 95.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Pyxidicoccus Pyxidicoccus fallax
28670489 28670489 PRJNA1174234_P_NODE_3227_length_731_cov_1.164134_g3050_i0 PRJNA1174234 3227 731 1.164134 8.50981954 Pseudomonadati 3379134 Bacteria Bacteria 64.7 6.85e-8   NR MBP6839133.1 2212474 g3050 i0 28.2 5.16279069767442 216 99 72.2 7 599 72 450 649 MBP6839133.1 hypothetical protein [Kofleriaceae bacterium] diamond 3774 65.1 0.993855606758833 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
28777387 28777387 PRJNA1174234_P_NODE_25787_length_270_cov_1.497462_g25591_i0 PRJNA1174234 25787 270 1.497462 4.0431474 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 61.6 8.73e-9   NR RLB97998.1 2026735 g25591 i0 39.3 3.95555555555556 89 51 98.9 1 268 2 154 239 RLB97998.1 MAG: signal peptide peptidase SppA [Deltaproteobacteria bacterium] diamond 1068 61.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28840527 28840527 PRJNA1174234_P_NODE_17308_length_331_cov_2.135659_g17112_i0 PRJNA1174234 17308 331 2.135659 7.06903129 Myxococcales bacterium 2026763 Bacteria Bacteria 84 2.69e-17   NR MCA9634375.1 2026763 g17112 i0 63.8 1.22356495468278 58 21 52.6 0 176 3 75 132 MCA9634375.1 hypothetical protein [Myxococcales bacterium] diamond 405 84 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
29093379 29093379 PRJNA1174234_P_NODE_17508_length_329_cov_2.378906_g17312_i0 PRJNA1174234 17508 329 2.378906 7.82660074 Archangium sp. 1872627 Bacteria Bacteria 44.7 0.0208   NR HZH13888.1 1872627 g17312 i0 32.1 0.993920972644377 109 60 95.7 4 316 2 481 579 HZH13888.1 serine protease [Archangium sp.] diamond 327 44.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium sp.
29250894 29250894 PRJNA1174234_P_NODE_13169_length_379_cov_1.509804_g12973_i0 PRJNA1174234 13169 379 1.509804 5.72215716 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 59.3 2.84e-7   NR MBM4354478.1 2026735 g12973 i0 41 2.62005277044855 83 43 61.7 3 17 250 975 1056 MBM4354478.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 993 59.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29250919 29250919 PRJNA1174234_P_NODE_25429_length_272_cov_1.547739_g25233_i0 PRJNA1174234 25429 272 1.547739 4.20985008 Paraliomyxa miuraensis 376150 Bacteria Bacteria 69.7 1.69e-11   NR WP_266214564.1 376150 g25233 i0 61.8 1.81985294117647 55 15 60.7 1 165 1 402 450 WP_266214564.1 AMP-dependent synthetase/ligase [Paraliomyxa miuraensis] diamond 495 69.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales   Paraliomyxa Paraliomyxa miuraensis
29503570 29503570 PRJNA1174234_P_NODE_27930_length_257_cov_1.543478_g27734_i0 PRJNA1174234 27930 257 1.543478 3.96673846 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 55.1 2.02e-6   NR RLB65038.1 2026735 g27734 i0 43.1 2.59143968871595 72 38 80.5 2 257 51 137 208 RLB65038.1 MAG: hypothetical protein DRI90_03060 [Deltaproteobacteria bacterium] diamond 666 55.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29870204 29870204 PRJNA1174234_P_NODE_15771_length_348_cov_1.120000_g15575_i0 PRJNA1174234 15771 348 1.12 3.8976 Archangium 47 Bacteria Bacteria 152 6.63e-41   NR WP_376759144.1 83451 g15575 i0 60.9 10.9310344827586 115 44 99.1 1 348 4 458 571 WP_376759144.1 LysM peptidoglycan-binding domain-containing protein [Archangium violaceum] diamond 3804 152 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium violaceum
30862008 30862008 PRJNA1174234_P_NODE_16814_length_336_cov_2.479087_g16618_i0 PRJNA1174234 16814 336 2.479087 8.32973232 Myxococcaceae bacterium 2484252 Bacteria Bacteria 67.8 1.75e-11   NR RYZ15474.1 2484252 g16618 i0 50.8 0.526785714285714 59 29 52.7 0 328 152 95 153 RYZ15474.1 MAG: ankyrin repeat domain-containing protein [Myxococcaceae bacterium] diamond 177 67.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
31747204 31747204 PRJNA1174234_P_NODE_21377_length_299_cov_0.995575_g21181_i0 PRJNA1174234 21377 299 0.995575 2.97676925 Myxococcota bacterium 2818507 Bacteria Bacteria 140 5.3699999999999996e-40   NR MEE3327274.1 2818507 g21181 i0 71.4 0.91304347826087 91 26 91.3 0 273 1 8 98 MEE3327274.1 nucleoside deaminase [Myxococcota bacterium] diamond 273 140 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
32158765 32158765 PRJNA1174234_P_NODE_8738_length_466_cov_1.854962_g8542_i0 PRJNA1174234 8738 466 1.854962 8.64412292 Polyangiales bacterium 3034171 Bacteria Bacteria 140 3.04e-35   NR MFO0694287.1 3034171 g8542 i0 45.8 0.927038626609442 144 76 92.7 2 34 465 242 383 MFO0694287.1 thrombospondin type 3 repeat-containing protein [Polyangiales bacterium] diamond 432 140 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales     Polyangiales bacterium
32790070 32790070 PRJNA1174234_P_NODE_15760_length_348_cov_1.400000_g15564_i0 PRJNA1174234 15760 348 1.4 4.872 Myxococcota bacterium 2818507 Bacteria Bacteria 75.5 5.01e-14   NR MFT5453703.1 2818507 g15564 i0 38.3 2.97413793103448 115 69 99.1 1 3 347 37 149 MFT5453703.1 SAM-dependent methyltransferase [Myxococcota bacterium] diamond 1035 75.5 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;