RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1174234" and tax_phylum = "Fidelibacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fidelibacterota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1174234 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9244088 9244088 PRJNA1174234_P_NODE_30628_length_249_cov_0.875000_g30432_i0 PRJNA1174234 30628 249 0.875 2.17875 Fidelibacterota bacterium 2026760 Bacteria Bacteria 106 1.22e-25   NR HIM73261.1 2026760 g30432 i0 78.5 4.01204819277108 65 14 78.3 0 248 54 253 317 HIM73261.1 cystathionine beta-synthase [Fidelibacterota bacterium] diamond 999 106 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
26819165 26819165 PRJNA1174234_P_NODE_24261_length_279_cov_1.839806_g24065_i0 PRJNA1174234 24261 279 1.839806 5.13305874 Fidelibacterota bacterium 2026760 Bacteria Bacteria 44.3 0.0156   NR MCH7763180.1 2026760 g24065 i0 48.8 0.462365591397849 43 21 46.2 1 3 131 363 404 MCH7763180.1 saccharopine dehydrogenase NADP-binding domain-containing protein [Fidelibacterota bacterium] diamond 129 44.3 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
26977220 26977220 PRJNA1174234_P_NODE_27802_length_258_cov_1.248649_g27606_i0 PRJNA1174234 27802 258 1.248649 3.22151442 Fidelibacterota bacterium 2026760 Bacteria Bacteria 108 1.16e-26   NR MCJ7802071.1 2026760 g27606 i0 56.5 0.988372093023256 85 35 96.5 2 254 6 171 255 MCJ7802071.1 lipase family protein [Fidelibacterota bacterium] diamond 255 108 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;