RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1174234" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1174234 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28619779 28619779 PRJNA1174234_P_NODE_11587_length_405_cov_1.325301_g11391_i0 PRJNA1174234 11587 405 1.325301 5.36746905 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 69.7 2.01e-11   NR HEY3780547.1 2682144 g11391 i0 43.3 0.666666666666667 90 44 66.7 1 93 362 120 202 HEY3780547.1 aquaporin [Fimbriimonadaceae bacterium] diamond 270 69.7 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium
29661126 29661126 PRJNA1174234_P_NODE_25570_length_271_cov_1.747475_g25374_i0 PRJNA1174234 25570 271 1.747475 4.73565725 Armatimonadota bacterium 2033014 Bacteria Bacteria 58.9 6.29e-8   NR MBI2264303.1 2033014 g25374 i0 46.8 0.686346863468635 62 33 68.6 0 186 1 45 106 MBI2264303.1 C39 family peptidase [Armatimonadota bacterium] diamond 186 58.9 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
32664190 32664190 PRJNA1174234_P_NODE_18040_length_324_cov_1.752988_g17844_i0 PRJNA1174234 18040 324 1.752988 5.67968112 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 47.8 2.58e-4   NR MEZ5162553.1 2682144 g17844 i0 35.5 0.703703703703704 76 47 69.4 2 84 308 26 100 MEZ5162553.1 hypothetical protein [Fimbriimonadaceae bacterium] diamond 228 47.8 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;