RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA1174234", tax_kingdom = "Thermotogati" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 9 ✖

tax_kingdom 1

  • Thermotogati · 9 ✖

bioproject 1

  • PRJNA1174234 · 9 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2866954 2866954 PRJNA1174234_P_NODE_22923_length_288_cov_1.195349_g22727_i0 PRJNA1174234 22923 288 1.195349 3.44260512 Trueperaceae bacterium 2026798 Bacteria Bacteria 381 2.9899999999999995e-101   NTclustered gi|2108366028|gb|CP070651.1| 2026798 g22727 i0 90.69 376.715277777778 290 22 99 5 1 287 6529 6816 MAG: Trueperaceae bacterium isolate bin86 chromosome blastn 108494 381 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae   Trueperaceae bacterium
6694096 6694096 PRJNA1174234_P_NODE_33606_length_244_cov_0.900585_g33410_i0 PRJNA1174234 33606 244 0.900585 2.1974274 uncultured Truepera sp. 543023 Bacteria Bacteria 153 2.73e-45   NR CAA9552189.1 543023 g33410 i0 93.8 1.99180327868852 81 5 99.6 0 1 243 69 149 CAA9552189.1 MAG: LSU ribosomal protein L6p (L9e) [uncultured Truepera sp.] diamond 486 153 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera uncultured Truepera sp.
9969025 9969025 PRJNA1174234_P_NODE_17608_length_329_cov_0.878906_g17412_i0 PRJNA1174234 17608 329 0.878906 2.89160074 Deinococcus 1298 Bacteria Bacteria 603 6.819999999999999e-168   NTclustered gi|2706837832|gb|CP149782.1| 3112952 g17412 i0 99.696 198.145896656535 329 1 100 0 1 329 1454948 1454620 Deinococcus sp. VB142 chromosome 1, complete sequence blastn 65190 603 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. VB142
11244224 11244224 PRJNA1174234_P_NODE_29209_length_251_cov_0.865169_g29013_i0 PRJNA1174234 29209 251 0.865169 2.17157419 uncultured Truepera sp. 543023 Bacteria Bacteria 140 1.02e-36   NR CAA9557446.1 543023 g29013 i0 84.3 0.99203187250996006 83 13 99.2 0 249 1 507 589 CAA9557446.1 MAG: Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 1 [uncultured Truepera sp.] diamond 249 140 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera uncultured Truepera sp.
11244236 11244236 PRJNA1174234_P_NODE_4289_length_646_cov_2.595113_g4100_i0 PRJNA1174234 4289 646 2.595113 16.76442998 Truepera 332248 Bacteria Bacteria 784 0   NTclustered gi|470486385|ref|NR_076754.1| 332249 g4100 i0 90.381 155.557275541796 603 48 92 8 1 597 1841 1243 Truepera radiovictrix strain RQ-24 23S ribosomal RNA gene, complete sequence blastn 100490 784 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera Truepera radiovictrix
12519598 12519598 PRJNA1174234_P_NODE_15470_length_351_cov_1.158273_g15274_i0 PRJNA1174234 15470 351 1.158273 4.06553823 Truepera 332248 Bacteria Bacteria 549 9.649999999999996e-152   NTclustered gi|470486385|ref|NR_076754.1| 332249 g15274 i0 94.886 159.074074074074 352 17 100 1 1 351 1753 2104 Truepera radiovictrix strain RQ-24 23S ribosomal RNA gene, complete sequence blastn 55835 549 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera Truepera radiovictrix
27040594 27040594 PRJNA1174234_P_NODE_31962_length_247_cov_0.867816_g31766_i0 PRJNA1174234 31962 247 0.867816 2.14350552 uncultured Truepera sp. 543023 Bacteria Bacteria 164 4.279999999999999e-48   NR CAA9581748.1 543023 g31766 i0 95.1 0.995951417004049 82 4 99.6 0 247 2 190 271 CAA9581748.1 MAG: Pyrimidine-specific ribonucleoside hydrolase RihB [uncultured Truepera sp.] diamond 246 164 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera uncultured Truepera sp.
27597017 27597017 PRJNA1174234_P_NODE_17484_length_330_cov_0.898833_g17288_i0 PRJNA1174234 17484 330 0.898833 2.9661489 Bacteria 2 Bacteria Bacteria 116 1.02e-27   NR WP_081895104.1 1495039 g17288 i0 63 67.0181818181818 92 33 82.7 1 330 58 356 447 WP_081895104.1 molecular chaperone DnaK [Mesoaciditoga lauensis] diamond 22116 117 0.991452991452991 Bacteria   Thermotogati Thermotogota Thermotogae Mesoaciditogales Mesoaciditogaceae Mesoaciditoga Mesoaciditoga lauensis
30135038 30135038 PRJNA1174234_P_NODE_33912_length_244_cov_0.894737_g33716_i0 PRJNA1174234 33912 244 0.894737 2.18315828 Synergistaceae bacterium 2053624 Bacteria Bacteria 46.6 0.00164   NR MBR2207957.1 2053624 g33716 i0 32.9 1.72131147540984 73 46 89.8 1 7 225 379 448 MBR2207957.1 ankyrin repeat domain-containing protein [Synergistaceae bacterium] diamond 420 46.6 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;