RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1174234", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 6 ✖

tax_kingdom 1

  • Pseudomonadati · 6 ✖

bioproject 1

  • PRJNA1174234 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15068640 15068640 PRJNA1174234_P_NODE_34632_length_242_cov_2.254438_g34436_i0 PRJNA1174234 34632 242 2.254438 5.45573996 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 105 2.96e-27   NR GJM17742.1 2202153 g34436 i0 67.5 0.991735537190083 80 19 99.2 1 1 240 18 90 GJM17742.1 MAG: hypothetical protein DHS20C13_30690 [Thermodesulfobacteriota bacterium] diamond 240 105 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
15618867 15618867 PRJNA1174234_P_NODE_25093_length_274_cov_1.532338_g24897_i0 PRJNA1174234 25093 274 1.532338 4.19860612 Desulfuromonas thiophila 57664 Bacteria Bacteria 285 2.28e-72   NTclustered gi|2621701248|emb|OY759968.1| 57664 g24897 i0 85.714 390.558394160584 273 36 99 3 1 272 5257 4987 MAG: Desulfuromonas thiophila isolate 5d13b52e-9f0b-4035-9b75-2cca1ad4870f genome assembly, chromosome: 1 blastn 107013 285 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Desulfuromonadaceae Desulfuromonas Desulfuromonas thiophila
28335453 28335453 PRJNA1174234_P_NODE_31686_length_247_cov_0.885057_g31490_i0 PRJNA1174234 31686 247 0.885057 2.18609079 Desulfatibacillum aliphaticivorans 218208 Bacteria Bacteria 66.6 1.51e-10   NR WP_015947357.1 218208 g31490 i0 40 1.03238866396761 85 45 98.4 4 2 244 358 440 WP_015947357.1 thrombospondin type-1 domain-containing protein [Desulfatibacillum aliphaticivorans] diamond 255 66.6 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfatibacillaceae Desulfatibacillum Desulfatibacillum aliphaticivorans
29522851 29522851 PRJNA1174234_P_NODE_26530_length_266_cov_1.041451_g26334_i0 PRJNA1174234 26530 266 1.041451 2.77025966 root 1 Root_unresolved Root_unresolved 89.4 1.95e-18   NR PIE63442.1 2293 g26334 i0 48.8 18.9360902255639 84 42 94.7 1 264 13 387 469 PIE63442.1 MAG: long-chain-fatty-acid--CoA ligase [Desulfobacter postgatei] diamond 5037 89.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae Desulfobacter Desulfobacter postgatei
30482939 30482939 PRJNA1174234_P_NODE_20753_length_303_cov_1.339130_g20557_i0 PRJNA1174234 20753 303 1.33913 4.0575639 Desulfobulbus rhabdoformis 34032 Bacteria Bacteria 66.2 1.06e-10   NR WP_205225496.1 34032 g20557 i0 54.5 1.31683168316832 44 20 43.6 0 301 170 164 207 WP_205225496.1 uracil phosphoribosyltransferase [Desulfobulbus rhabdoformis] diamond 399 66.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Desulfobulbus Desulfobulbus rhabdoformis
30596739 30596739 PRJNA1174234_P_NODE_24233_length_280_cov_0.874396_g24037_i0 PRJNA1174234 24233 280 0.874396 2.4483088 Pseudomonadati 3379134 Bacteria Bacteria 44.7 0.00865   NR HXV20510.1 2099678 g24037 i0 48.7 3.99642857142857 39 20 41.8 0 6 122 170 208 HXV20510.1 CAP domain-containing protein [Desulfuromonadales bacterium] diamond 1119 44.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales     Desulfuromonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;