RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA1174234", tax_kingdom = "Fungi" and tax_phylum = "Cryptomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Cryptomycota · 4 ✖

tax_kingdom 1

  • Fungi · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1174234 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24542061 24542061 PRJNA1174234_P_NODE_19020_length_316_cov_2.436214_g18824_i0 PRJNA1174234 19020 316 2.436214 7.69843624 Paramicrosporidium saccamoebae 1246581 Fungi Fungi 168 5.79e-51   NR PJF20044.1 1246581 g18824 i0 77.1 2.93354430379747 105 24 99.7 0 316 2 54 158 PJF20044.1 hypothetical protein PSACC_00140 [Paramicrosporidium saccamoebae] diamond 927 168 1 Eukaryota Opisthokonta Fungi Cryptomycota       Paramicrosporidium Paramicrosporidium saccamoebae
31450311 31450311 PRJNA1174234_P_NODE_11596_length_405_cov_1.228916_g11400_i0 PRJNA1174234 11596 405 1.228916 4.9771098 Eukaryota 2759 Fungi Fungi 156 2.9199999999999996e-45   NR EPZ30856.1 988480 g11400 i0 60.3 8.68888888888889 116 46 85.9 0 1 348 93 208 EPZ30856.1 Proteasome subunit beta type-6 [Rozella allomycis CSF55] diamond 3519 157 0.993630573248408 Eukaryota Opisthokonta Fungi Cryptomycota       Rozella Rozella allomycis
31494428 31494428 PRJNA1174234_P_NODE_36016_length_239_cov_6.036145_g35820_i0 PRJNA1174234 36016 239 6.036145 14.42638655 Rozella allomycis CSF55 988480 Fungi Fungi 82 9.7e-17   NR EPZ34692.1 988480 g35820 i0 66.2 3.94142259414226 65 21 80.3 1 215 24 190 254 EPZ34692.1 Nucleic acid-binding domain-containing protein [Rozella allomycis CSF55] diamond 942 82 1 Eukaryota Opisthokonta Fungi Cryptomycota       Rozella Rozella allomycis
31968666 31968666 PRJNA1174234_P_NODE_26558_length_265_cov_2.385417_g26362_i0 PRJNA1174234 26558 265 2.385417 6.32135505 Rozella allomycis CSF55 988480 Fungi Fungi 87 1.7e-18   NR EPZ34692.1 988480 g26362 i0 64.8 1.52830188679245 71 22 77 2 5 208 184 254 EPZ34692.1 Nucleic acid-binding domain-containing protein [Rozella allomycis CSF55] diamond 405 87 1 Eukaryota Opisthokonta Fungi Cryptomycota       Rozella Rozella allomycis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;