RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1174234", tax_clade = "Stenosarchaea group" and tax_phylum = "Methanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 3 ✖

tax_kingdom 1

tax_clade 1

  • Stenosarchaea group · 3 ✖

bioproject 1

  • PRJNA1174234 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27861727 27861727 PRJNA1174234_P_NODE_31065_length_248_cov_0.880000_g30869_i0 PRJNA1174234 31065 248 0.88 2.1824 Methanomicrobiales archaeon 2184052 Archaea Archaea 50.1 9.84e-5   NR MEI6842808.1 2184052 g30869 i0 42.9 1.51209677419355 56 30 65.3 1 245 84 78 133 MEI6842808.1 protein kinase [Methanomicrobiales archaeon] diamond 375 50.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales     Methanomicrobiales archaeon
31589335 31589335 PRJNA1174234_P_NODE_24376_length_279_cov_1.106796_g24180_i0 PRJNA1174234 24376 279 1.106796 3.08796084 Methanotrichaceae archaeon 2595067 Archaea Archaea 43.1 0.0386   NR MDD1753682.1 2595067 g24180 i0 41.3 0.67741935483871 63 30 67.7 2 59 247 120 175 MDD1753682.1 thermosome subunit [Methanotrichaceae archaeon] diamond 189 43.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae   Methanotrichaceae archaeon
32790106 32790106 PRJNA1174234_P_NODE_31160_length_248_cov_0.880000_g30964_i0 PRJNA1174234 31160 248 0.88 2.1824 Methanoregulaceae archaeon 2485498 Archaea Archaea 57.8 1.99e-7   NR HNJ81026.1 2485498 g30964 i0 41.7 0.725806451612903 60 33 72.6 1 203 24 603 660 HNJ81026.1 Ig-like domain-containing protein [Methanoregulaceae archaeon] diamond 180 57.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae   Methanoregulaceae archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;