RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA1174234", tax_clade = "Sar" and tax_phylum = "Cercozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1174234 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11794642 11794642 PRJNA1174234_P_NODE_11830_length_401_cov_0.939024_g11634_i0 PRJNA1174234 11830 401 0.939024 3.76548624 Bigelowiella natans 227086 SAR_Eukaryotes SAR_Eukaryotes 60.2 2.3e-4   NTclustered gi|413965562|gb|AC254089.1| 227086 g11634 i0 100 0.296758104738155 32 0 8 0 222 253 23249 23218 Bigelowiella natans clone JGIFHCC-65I16, complete sequence blastn 119 60.2 1 Eukaryota Sar   Cercozoa Chlorarachniophyceae     Bigelowiella Bigelowiella natans
26913895 26913895 PRJNA1174234_P_NODE_28542_length_254_cov_1.066298_g28346_i0 PRJNA1174234 28542 254 1.066298 2.70839692 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 82 7.69e-18   NR MES1912234.1 1215613 g28346 i0 54.7 1.77165354330709 75 31 88.6 2 236 12 49 120 MES1912234.1 hypothetical protein [Cercozoa sp. M6MM] diamond 450 82 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM
27798886 27798886 PRJNA1174234_P_NODE_34224_length_243_cov_0.905882_g34028_i0 PRJNA1174234 34224 243 0.905882 2.20129326 Bigelowiella natans 227086 SAR_Eukaryotes SAR_Eukaryotes 80.1 1.65e-15   NR ADR72980.1 227086 g34028 i0 55.6 0.888888888888889 72 31 88.9 1 241 26 245 315 ADR72980.1 guanine nucleotide-binding protein alpha subunit [Bigelowiella natans] diamond 216 80.1 1 Eukaryota Sar   Cercozoa Chlorarachniophyceae     Bigelowiella Bigelowiella natans
27956629 27956629 PRJNA1174234_P_NODE_24685_length_277_cov_1.132353_g24489_i0 PRJNA1174234 24685 277 1.132353 3.13661781 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 129 6.84e-33   NR MES1906893.1 1215613 g24489 i0 63.7 0.985559566787004 91 33 98.6 0 3 275 103 193 MES1906893.1 hypothetical protein [Cercozoa sp. M6MM] diamond 273 129 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;