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contig_metadata

35 rows where bioproject = "PRJNA1174234", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 35 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 35 ✖

bioproject 1

  • PRJNA1174234 · 35 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1590878 1590878 PRJNA1174234_P_NODE_9702_length_442_cov_3.975610_g9506_i0 PRJNA1174234 9702 442 3.97561 17.5721962 Caenorhabditis brenneri 135651 Nematoda Nematoda 112 1.59e-28   NR EGT34536.1 135651 g9506 i0 55.1 2.60633484162896 98 44 66.5 0 324 31 37 134 EGT34536.1 hypothetical protein CAEBREN_26317 [Caenorhabditis brenneri] diamond 1152 113 0.991150442477876 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis brenneri
5419147 5419147 PRJNA1174234_P_NODE_17045_length_334_cov_1.386973_g16849_i0 PRJNA1174234 17045 334 1.386973 4.63248982 Strongyloides papillosus 174720 Nematoda Nematoda 220 8.16e-53   NTclustered gi|690020567|emb|LM528097.1| 174720 g16849 i0 79.193 20.0658682634731 322 63 96 4 2 321 110 429 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0002428 blastn 6702 220 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
6693987 6693987 PRJNA1174234_P_NODE_15206_length_354_cov_1.056940_g15010_i0 PRJNA1174234 15206 354 1.05694 3.7415676 Caenorhabditis remanei 31234 Nematoda Nematoda 176 1.9e-39   NTclustered gi|2445378119|ref|XM_003100380.2| 31234 g15010 i0 85.294 31.8022598870057 170 25 48 0 95 264 194 25 Caenorhabditis remanei uncharacterized protein (GCK72_016568), partial mRNA blastn 11258 176 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
10519711 10519711 PRJNA1174234_P_NODE_19949_length_309_cov_1.305085_g19753_i0 PRJNA1174234 19949 309 1.305085 4.03271265 Soboliphyme baturini 241478 Nematoda Nematoda 128 9.1e-36   NR VDO98973.1 241478 g19753 i0 69.3 1.95145631067961 101 31 98.1 0 2 304 15 115 VDO98973.1 unnamed protein product [Soboliphyme baturini] diamond 603 128 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dioctophymatida Soboliphymatidae Soboliphyme Soboliphyme baturini
10519797 10519797 PRJNA1174234_P_NODE_3409_length_714_cov_1.862715_g3230_i0 PRJNA1174234 3409 714 1.862715 13.2997851 Strongyloides ratti 34506 Nematoda Nematoda 484 5.94e-132   NTclustered gi|1376145717|ref|XM_024653392.1| 34506 g3230 i0 80.538 20.1680672268908 632 121 88 2 82 712 1291 661 Strongyloides ratti 26S proteasome regulatory complex subunit p50 (SRAE_2000233400), partial mRNA blastn 14400 484 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
12519612 12519612 PRJNA1174234_P_NODE_27630_length_259_cov_1.241935_g27434_i0 PRJNA1174234 27630 259 1.241935 3.21661165 Opisthokonta 33154 Nematoda Nematoda 207 4.76e-49   NTclustered gi|687022644|emb|LM525558.1| 174720 g27434 i0 82.833 54.0926640926641 233 38 90 2 28 259 232766 232535 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000004 blastn 14010 209 0.990430622009569 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
13069639 13069639 PRJNA1174234_P_NODE_1371_length_1020_cov_2.142555_g1246_i0 PRJNA1174234 1371 1020 2.142555 21.854061 Strongyloides ratti 34506 Nematoda Nematoda 497 1.11e-135   NTclustered gi|1376154049|ref|XM_024646386.1| 34506 g1246 i0 80.271 18.0166666666667 664 127 65 4 351 1012 1442 781 Strongyloides ratti V-type proton ATPase subunit B, kidney (SRAE_X000121000), partial mRNA blastn 18377 497 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
14345168 14345168 PRJNA1174234_P_NODE_4872_length_609_cov_2.638060_g4679_i0 PRJNA1174234 4872 609 2.63806 16.0657854 Gongylonema pulchrum 637853 Nematoda Nematoda 267 2.88e-86   NR VDK47489.1 637853 g4679 i0 72.7 11.8374384236453 172 47 84.7 0 2 517 155 326 VDK47489.1 unnamed protein product [Gongylonema pulchrum] diamond 7209 267 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Gongylonematidae Gongylonema Gongylonema pulchrum
18167650 18167650 PRJNA1174234_P_NODE_11655_length_404_cov_1.145015_g11459_i0 PRJNA1174234 11655 404 1.145015 4.6258606 Strongyloides ratti 34506 Nematoda Nematoda 316 1.24e-81   NTclustered gi|1376156977|ref|XM_024645910.1| 34506 g11459 i0 81.378 39.3787128712871 392 69 97 4 8 397 1146 757 Strongyloides ratti RE01104p (SRAE_0000006900), partial mRNA blastn 15909 316 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
21442876 21442876 PRJNA1174234_P_NODE_23757_length_283_cov_0.852381_g23561_i0 PRJNA1174234 23757 283 0.85238100000000006 2.41223823 Opisthokonta 33154 Nematoda Nematoda 54.7 0.007   NTclustered gi|2082294080|ref|XM_043074478.1| 6279 g23561 i0 100 1.85512367491166 29 0 10 0 95 123 57 29 Brugia malayi Uncharacterized protein (Bma-igcm-3), partial mRNA blastn 525 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia malayi
21992700 21992700 PRJNA1174234_P_NODE_19138_length_315_cov_3.842975_g18942_i0 PRJNA1174234 19138 315 3.842975 12.10537125 Diplogastrellus sp. VS-2014 1538693 Nematoda Nematoda 163 1.31e-35   NTclustered gi|675119125|gb|KJ877442.1| 1538693 g18942 i0 82.703 46.0952380952381 185 30 58 2 97 280 64 247 Diplogastrellus sp. VS-2014 strain RS5608 small subunit ribosomal protein 27 (rps-27) mRNA, partial cds blastn 14520 163 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Diplogastrellus Diplogastrellus sp. VS-2014
23993121 23993121 PRJNA1174234_P_NODE_33239_length_245_cov_0.895349_g33043_i0 PRJNA1174234 33239 245 0.895349 2.19360505 root 1 Root_unresolved Root_unresolved 115 2.15e-29   NR KAE9412471.1 6313 g33043 i0 70.7 17.9142857142857 82 23 99.2 1 3 245 21 102 KAE9412471.1 hypothetical protein Angca_008729, partial [Angiostrongylus cantonensis] diamond 4389 115 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Metastrongylidae Angiostrongylus Angiostrongylus cantonensis
24542059 24542059 PRJNA1174234_P_NODE_18860_length_318_cov_0.942857_g18664_i0 PRJNA1174234 18860 318 0.942857 2.99828526 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.03   NTclustered gi|687022641|emb|LM525555.1| 174720 g18664 i0 100 0.0880503144654088 28 0 9 0 14 41 158651 158678 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000001 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
24542149 24542149 PRJNA1174234_P_NODE_34400_length_243_cov_0.905882_g34204_i0 PRJNA1174234 34400 243 0.905882 2.20129326 Aphelenchoides 90723 Nematoda Nematoda 105 1.09e-24   NR KAI6183611.1 293665 g34204 i0 83.6 1.35802469135802 55 9 67.9 0 170 6 146 200 KAI6183611.1 2-cys peroxiredoxin [Aphelenchoides bicaudatus] diamond 330 105 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides bicaudatus
24542174 24542174 PRJNA1174234_P_NODE_5360_length_584_cov_2.217221_g5165_i0 PRJNA1174234 5360 584 2.217221 12.94857064 Strongyloides ratti 34506 Nematoda Nematoda 433 1.7599999999999995e-116   NTclustered gi|1376142265|ref|XM_024651434.1| 34506 g5165 i0 80.526 80.9965753424657 570 105 97 6 16 582 1155 589 Strongyloides ratti Elongation factor 1-alpha (SRAE_2000058600), partial mRNA blastn 47302 433 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
26755428 26755428 PRJNA1174234_P_NODE_16421_length_341_cov_0.970149_g16225_i0 PRJNA1174234 16421 341 0.970149 3.30820809 Necator americanus 51031 Nematoda Nematoda 189 9.169999999999999e-54   NR ETN71939.1 51031 g16225 i0 76.1 0.958944281524927 109 26 95.9 0 327 1 307 415 ETN71939.1 WD domain, G-beta repeat protein [Necator americanus] diamond 327 189 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus
27376115 27376115 PRJNA1174234_P_NODE_17003_length_334_cov_2.295019_g16807_i0 PRJNA1174234 17003 334 2.295019 7.66536346 Rhabditida 6236 Nematoda Nematoda 143 2.91e-38   NR XP_064044047.1 51031 g16807 i0 62.3 10.4820359281437 106 40 95.2 0 331 14 137 242 XP_064044047.1 hypothetical protein RB195_020037 [Necator americanus] diamond 3501 144 0.993055555555556 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus
27628642 27628642 PRJNA1174234_P_NODE_28064_length_256_cov_1.683060_g27868_i0 PRJNA1174234 28064 256 1.68306 4.3086336 Trichinella 6333 Nematoda Nematoda 134 1.27e-38   NR XP_003377850.1 6334 g27868 i0 75.3 4.53515625 77 19 90.2 0 25 255 3 79 XP_003377850.1 60S ribosomal protein L37 [Trichinella spiralis] diamond 1161 134 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
28702041 28702041 PRJNA1174234_P_NODE_14987_length_356_cov_1.303887_g14791_i0 PRJNA1174234 14987 356 1.303887 4.64183772 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 135 1.87e-34   NR VBB32881.1 6277 g14791 i0 60.3 14.6797752808989 116 46 97.8 0 8 355 452 567 VBB32881.1 unnamed protein product [Acanthocheilonema viteae] diamond 5226 136 0.992647058823529 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Acanthocheilonema Acanthocheilonema viteae
29144285 29144285 PRJNA1174234_P_NODE_25009_length_275_cov_1.143564_g24813_i0 PRJNA1174234 25009 275 1.143564 3.144801 Metazoa 33208 Nematoda Nematoda 121 9.469999999999999e-32   NR XP_024500476.1 34506 g24813 i0 68.1 6.94909090909091 91 27 99.3 1 273 1 171 259 XP_024500476.1 40S ribosomal protein S4 [Strongyloides ratti] diamond 1911 121 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
29408919 29408919 PRJNA1174234_P_NODE_26069_length_268_cov_2.261538_g25873_i0 PRJNA1174234 26069 268 2.261538 6.06092184 Bursaphelenchus xylophilus 6326 Nematoda Nematoda 55.8 8.51e-7   NR CAD5211571.1 6326 g25873 i0 29.2 0.996268656716418 89 62 99.6 1 2 268 138 225 CAD5211571.1 unnamed protein product [Bursaphelenchus xylophilus] diamond 267 55.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
29471850 29471850 PRJNA1174234_P_NODE_3890_length_674_cov_2.454243_g3702_i0 PRJNA1174234 3890 674 2.454243 16.54159782 Dirofilaria immitis 6287 Nematoda Nematoda 121 8.8e-29   NR MCP9262862.1 6287 g3702 i0 37.6 1.80712166172107 202 113 88.1 5 608 15 158 350 MCP9262862.1 Cathepsin L [Dirofilaria immitis] diamond 1218 121 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Dirofilaria Dirofilaria immitis
29724449 29724449 PRJNA1174234_P_NODE_5130_length_595_cov_1.915709_g4935_i0 PRJNA1174234 5130 595 1.915709 11.39846855 Mesorhabditis belari 2138241 Nematoda Nematoda 89.4 1.05e-18   NR CAJ0960039.1 2138241 g4935 i0 38.1 0.781512605042017 155 87 77.6 3 60 521 12 158 CAJ0960039.1 unnamed protein product, partial [Mesorhabditis belari] diamond 465 89.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis belari
30135057 30135057 PRJNA1174234_P_NODE_9832_length_439_cov_7.336066_g9636_i0 PRJNA1174234 9832 439 7.336066 32.20532974 Pristionchus fissidentatus 1538716 Nematoda Nematoda 92.8 4.39e-21   NR GMT18625.1 1538716 g9636 i0 42 0.895216400911162 131 70 88.8 3 439 50 1 126 GMT18625.1 hypothetical protein PFISCL1PPCAC_9922 [Pristionchus fissidentatus] diamond 393 92.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus fissidentatus
30166793 30166793 PRJNA1174234_P_NODE_30852_length_248_cov_1.285714_g30656_i0 PRJNA1174234 30852 248 1.285714 3.18857072 Ancylostoma ceylanicum 53326 Nematoda Nematoda 41.2 0.0456   NR EYC41684.1 53326 g30656 i0 48 0.604838709677419 50 22 60.5 1 34 183 53 98 EYC41684.1 hypothetical protein Y032_0559g3442 [Ancylostoma ceylanicum] diamond 150 41.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma ceylanicum
30344695 30344695 PRJNA1174234_P_NODE_31492_length_247_cov_1.028736_g31296_i0 PRJNA1174234 31492 247 1.028736 2.54097792 Opisthokonta 33154 Nematoda Nematoda 131 2.93e-34   NR KHN79029.1 6265 g31296 i0 78.2 24.6315789473684 78 17 94.7 0 3 236 221 298 KHN79029.1 putative ornithine aminotransferase, mitochondrial [Toxocara canis] diamond 6084 132 0.992424242424242 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
30470655 30470655 PRJNA1174234_P_NODE_18353_length_322_cov_1.024096_g18157_i0 PRJNA1174234 18353 322 1.024096 3.29758912 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 90.5 9.05e-21   NR CAJ0575662.1 96644 g18157 i0 45.1 8.69254658385093 102 51 90.4 2 26 316 1 102 CAJ0575662.1 unnamed protein product, partial [Mesorhabditis spiculigera] diamond 2799 91.3 0.991237677984666 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis spiculigera
30628247 30628247 PRJNA1174234_P_NODE_28433_length_254_cov_1.701657_g28237_i0 PRJNA1174234 28433 254 1.701657 4.32220878 Mesorhabditis 53475 Nematoda Nematoda 103 3.14e-24   NR CAJ0581997.1 96644 g28237 i0 47.6 1.98425196850394 84 44 99.2 0 253 2 164 247 CAJ0581997.1 unnamed protein product, partial [Mesorhabditis spiculigera] diamond 504 103 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis spiculigera
31494402 31494402 PRJNA1174234_P_NODE_23336_length_285_cov_1.448113_g23140_i0 PRJNA1174234 23336 285 1.448113 4.12712205 Aphelenchoides besseyi 269767 Nematoda Nematoda 80.5 2.45e-16   NR KAI6180613.1 269767 g23140 i0 61.7 6.95789473684211 60 23 63.2 0 2 181 136 195 KAI6180613.1 60S ribosomal protein L18 [Aphelenchoides besseyi] diamond 1983 80.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides besseyi
31810577 31810577 PRJNA1174234_P_NODE_25777_length_270_cov_1.563452_g25581_i0 PRJNA1174234 25777 270 1.563452 4.2213204 Ditylenchus destructor 166010 Nematoda Nematoda 59.7 5.33e-8   NR KAI1722084.1 166010 g25581 i0 39.3 0.988888888888889 89 48 98.9 2 269 3 389 471 KAI1722084.1 tRNA synthetases class I (E and q), catalytic domain-containing protein [Ditylenchus destructor] diamond 267 59.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anguinidae Ditylenchus Ditylenchus destructor
32589222 32589222 PRJNA1174234_P_NODE_31439_length_247_cov_1.327586_g31243_i0 PRJNA1174234 31439 247 1.327586 3.27913742 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 94.4 2.7e-20   NR KAH7725415.1 70226 g31243 i0 58.6 6.09716599190283 70 29 85 0 2 211 538 607 KAH7725415.1 Plastin-1 [Aphelenchoides avenae] diamond 1506 94.7 0.996832101372756 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides avenae
32632640 32632640 PRJNA1174234_P_NODE_22660_length_290_cov_0.963134_g22464_i0 PRJNA1174234 22660 290 0.963134 2.7930886 Ditylenchus destructor 166010 Nematoda Nematoda 45.4 0.00231   NR KAI1713822.1 166010 g22464 i0 55.3 1.3448275862069 38 17 39.3 0 116 3 16 53 KAI1713822.1 hypothetical protein Ddc_11714 [Ditylenchus destructor] diamond 390 45.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anguinidae Ditylenchus Ditylenchus destructor
32695743 32695743 PRJNA1174234_P_NODE_18060_length_324_cov_1.470120_g17864_i0 PRJNA1174234 18060 324 1.47012 4.7631888 Pristionchus pacificus 54126 Nematoda Nematoda 44.7 0.00571   NR KAF8354458.1 54126 g17864 i0 43.9 0.731481481481482 41 23 38 0 322 200 57 97 KAF8354458.1 hypothetical protein PRIPAC_96081 [Pristionchus pacificus] diamond 237 44.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pacificus
32758805 32758805 PRJNA1174234_P_NODE_12400_length_391_cov_0.968553_g12204_i0 PRJNA1174234 12400 391 0.968553 3.78704223 Trichuris trichiura 36087 Nematoda Nematoda 47 0.00547   NR CDW58848.1 36087 g12204 i0 35.7 0.537084398976982 70 42 51.4 1 318 118 89 158 CDW58848.1 Gut specific cysteine proteinase [Trichuris trichiura] diamond 210 47 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris trichiura
32809383 32809383 PRJNA1174234_P_NODE_31440_length_247_cov_1.327586_g31244_i0 PRJNA1174234 31440 247 1.327586 3.27913742 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 87 7.37e-18   NR XP_064050254.1 51031 g31244 i0 51.2 1.84615384615385 82 38 97.2 1 245 6 246 327 XP_064050254.1 hypothetical protein RB195_011316 [Necator americanus] diamond 456 87.8 0.990888382687927 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;