RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1174234", tax_clade = "Metamonada" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 3 ✖

tax_clade 1

  • Metamonada · 3 ✖

bioproject 1

  • PRJNA1174234 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4869010 4869010 PRJNA1174234_P_NODE_35964_length_241_cov_0.880952_g35768_i0 PRJNA1174234 35964 241 0.880952 2.12309432 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 77 9.9e-15   NR XP_067778607.1 135588 g35768 i0 48.7 1.91701244813278 78 40 97.1 0 5 238 102 179 XP_067778607.1 NAD-dependent protein deacetylase Sirt2-like isoform X2 [Histomonas meleagridis] diamond 462 77 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
28986356 28986356 PRJNA1174234_P_NODE_16248_length_342_cov_2.657993_g16052_i0 PRJNA1174234 16248 342 2.657993 9.09033606 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 44.3 0.00664   NR XP_001314726.1 412133 g16052 i0 42.2 1.10526315789474 45 22 39.5 1 139 5 51 91 XP_001314726.1 positive regulation of ATP-dependent microtubule motor activity, plus-end-directed [Trichomonas vaginalis G3] diamond 378 44.3 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
29851164 29851164 PRJNA1174234_P_NODE_5491_length_577_cov_12.065476_g5296_i0 PRJNA1174234 5491 577 12.065476 69.61779652 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 199 1.23e-61   NR XP_068360038.1 1144522 g5296 i0 57.2 6.38994800693241 173 74 89.9 0 28 546 5 177 XP_068360038.1 40S ribosomal protein S9-1 [Tritrichomonas foetus] diamond 3687 199 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;