RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1174234", tax_clade = "FCB group" and tax_phylum = "Ignavibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA1174234 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2866860 2866860 PRJNA1174234_P_NODE_11343_length_410_cov_1.376855_g11147_i0 PRJNA1174234 11343 410 1.376855 5.6451055 Bacteria 2 Bacteria Bacteria 183 1.23e-54   NR MDZ7763018.1 2614255 g11147 i0 64.2 13.0317073170732 137 48 99.5 1 1 408 125 261 MDZ7763018.1 NAD(P)-dependent alcohol dehydrogenase [Melioribacteraceae bacterium] diamond 5343 184 0.994565217391304 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Melioribacteraceae   Melioribacteraceae bacterium
20717405 20717405 PRJNA1174234_P_NODE_11657_length_404_cov_1.117825_g11461_i0 PRJNA1174234 11657 404 1.117825 4.516013 Ignavibacteriae bacterium HGW-Ignavibacteriae-3 2013810 Bacteria Bacteria 144 1.54e-38   NR PKL82830.1 2013810 g11461 i0 58.5 5.88118811881188 130 53 96.5 1 390 1 256 384 PKL82830.1 MAG: phosphoglycerate kinase [Ignavibacteriae bacterium HGW-Ignavibacteriae-3] diamond 2376 144 1 Bacteria FCB group Pseudomonadati Ignavibacteriota         Ignavibacteriae bacterium HGW-Ignavibacteriae-3
27988195 27988195 PRJNA1174234_P_NODE_29405_length_251_cov_0.865169_g29209_i0 PRJNA1174234 29405 251 0.865169 2.17157419 Ignavibacteriales bacterium 2049428 Bacteria Bacteria 58.5 1.08e-7   NR HOP49374.1 2049428 g29209 i0 43 1.02788844621514 86 44 98 2 249 4 23 107 HOP49374.1 TolC family protein [Ignavibacteriales bacterium] diamond 258 58.5 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales     Ignavibacteriales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;