RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1174234", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA1174234 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13069765 13069765 PRJNA1174234_P_NODE_33311_length_245_cov_0.860465_g33115_i0 PRJNA1174234 33311 245 0.860465 2.10813925 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 161 1.81e-44   NR MBA3443541.1 2448054 g33115 i0 97.5 1.98367346938776 81 2 99.2 0 3 245 332 412 MBA3443541.1 asparagine synthase (glutamine-hydrolyzing) [Gemmatimonadales bacterium] diamond 486 161 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
15618863 15618863 PRJNA1174234_P_NODE_24733_length_277_cov_0.946078_g24537_i0 PRJNA1174234 24733 277 0.946078 2.62063606 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 394 3.68e-105   NTclustered gi|2874253938|emb|OY970263.1| 412054 g24537 i0 95.547 185.916967509025 247 10 89 1 31 277 801715 801960 MAG: uncultured Gemmatimonadales bacterium isolate MFD02416.bin.2.26 genome assembly, chromosome: 1 blastn 51499 394 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
17618738 17618738 PRJNA1174234_P_NODE_25134_length_274_cov_1.348259_g24938_i0 PRJNA1174234 25134 274 1.348259 3.69422966 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 94 1.81e-20   NR HKN69228.1 2026741 g24938 i0 50.6 1.94890510948905 89 44 97.4 0 269 3 93 181 HKN69228.1 alkene reductase [Gemmatimonadaceae bacterium] diamond 534 94 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;