RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1174234", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Altimarinota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA1174234 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14345048 14345048 PRJNA1174234_P_NODE_17852_length_326_cov_1.217391_g17656_i0 PRJNA1174234 17852 326 1.217391 3.96869466 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 56.5 0.002   NTclustered gi|2621702180|emb|OY760177.1| 2044595 g17656 i0 85.185 0.343558282208589 54 8 17 0 237 290 1023903 1023956 MAG: Candidatus Gracilibacteria bacterium isolate ba77f91b-d06a-446b-8ae6-f296fa1be4ef genome assembly, chromosome: 1 blastn 112 56.5 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
27261937 27261937 PRJNA1174234_P_NODE_30643_length_249_cov_0.875000_g30447_i0 PRJNA1174234 30643 249 0.875 2.17875 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 43.5 0.02   NR MDD5769376.1 2044595 g30447 i0 45 0.72289156626506 60 29 67.5 3 218 51 182 241 MDD5769376.1 methionyl-tRNA formyltransferase [Candidatus Altimarinota bacterium] diamond 180 43.5 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
27356805 27356805 PRJNA1174234_P_NODE_31423_length_247_cov_1.327586_g31227_i0 PRJNA1174234 31423 247 1.327586 3.27913742 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 43.5 0.0195   NR HIQ57716.1 2044595 g31227 i0 52.6 1.38461538461538 38 18 46.2 0 6 119 272 309 HIQ57716.1 ABC-F family ATP-binding cassette domain-containing protein [Candidatus Altimarinota bacterium] diamond 342 43.5 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;