RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where bioproject = "PRJNA1174207" and tax_phylum = "Bacillariophyta"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA1174207 · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9243255 9243255 PRJNA1174207_P_NODE_13608_length_396_cov_1.510836_g13079_i0 PRJNA1174207 13608 396 1.510836 5.98291056 Coscinodiscophyceae 33836 SAR_Eukaryotes SAR_Eukaryotes 140 8.82e-40   NR EJK71956.1 159749 g13079 i0 58.8 4.41666666666667 114 47 86.4 0 12 353 26 139 EJK71956.1 hypothetical protein THAOC_06555 [Thalassiosira oceanica] diamond 1749 140 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Thalassiosiraceae Thalassiosira Thalassiosira oceanica
9968659 9968659 PRJNA1174207_P_NODE_21308_length_309_cov_2.055085_g20779_i0 PRJNA1174207 21308 309 2.055085 6.35021265 Chaetoceros 49237 SAR_Eukaryotes SAR_Eukaryotes 134 9.999999999999999e-27   NTclustered gi|126116696|gb|EF423434.1| 426634 g20779 i0 95.238 27.1844660194175 84 4 27 0 226 309 385 302 Chaetoceros lorenzianus strain DH2 large subunit ribosomal RNA gene, partial sequence blastn 8400 134 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Chaetocerotales Chaetocerotaceae Chaetoceros Chaetoceros lorenzianus
27767318 27767318 PRJNA1174207_P_NODE_42404_length_234_cov_3.198758_g41875_i0 PRJNA1174207 42404 234 3.198758 7.48509372 Seminavis robusta 568900 SAR_Eukaryotes SAR_Eukaryotes 51.2 2.21e-5   NR CAB9505123.1 568900 g41875 i0 48.8 0.525641025641026 41 21 52.6 0 127 5 149 189 CAB9505123.1 expressed unknown protein [Seminavis robusta] diamond 123 51.2 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Seminavis Seminavis robusta
30893773 30893773 PRJNA1174207_P_NODE_31654_length_258_cov_1.135135_g31125_i0 PRJNA1174207 31654 258 1.135135 2.9286483 Cylindrotheca closterium 2856 SAR_Eukaryotes SAR_Eukaryotes 50.4 8.78e-5   NR CAJ1945933.1 2856 g31125 i0 39.6 1.27906976744186 48 29 55.8 0 252 109 470 517 CAJ1945933.1 unnamed protein product [Cylindrotheca closterium] diamond 330 50.4 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Cylindrotheca Cylindrotheca closterium
32190268 32190268 PRJNA1174207_P_NODE_41118_length_241_cov_1.833333_g40589_i0 PRJNA1174207 41118 241 1.833333 4.41833253 Cyclotella atomus 382360 SAR_Eukaryotes SAR_Eukaryotes 104 5.33e-24   NR KAL3803283.1 382360 g40589 i0 66.2 0.921161825726141 74 25 92.1 0 224 3 205 278 KAL3803283.1 hypothetical protein ACHAWO_000112 [Cyclotella atomus] diamond 222 104 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Cyclotella Cyclotella atomus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;