RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1174207" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 3 ✖

bioproject 1

  • PRJNA1174207 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4142497 4142497 PRJNA1174207_P_NODE_2624_length_1145_cov_3.407649_g1488_i1 PRJNA1174207 2624 1145 3.407649 39.01758105 Gammaretrovirus murleu 3428959 Viruses Viruses 1598 0   NTclustered gi|1443026875|gb|MH450110.1| 11837 g1488 i1 97.939 106.26288209607 922 19 100 0 1 922 8167 7246 Xenotropic murine leukemia virus isolate AKR6, complete genome blastn 121671 1598 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
8693654 8693654 PRJNA1174207_P_NODE_34347_length_250_cov_0.870056_g33818_i0 PRJNA1174207 34347 250 0.870056 2.17514 root 1 Root_unresolved Root_unresolved 457 4.1099999999999985e-124   NTclustered gi|57547621|tpd|BR000030.1| 10654 g33818 i0 99.6 95.92 250 1 100 0 1 250 3390 3141 TPA_inf: Rice tungro bacilliform virus orf x, orf y and orf z genes for hypothetical proteins, isolate:ERTBV-B blastn 23980 457 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Tungrovirus Tungrovirus oryzae
18892347 18892347 PRJNA1174207_P_NODE_455_length_2761_cov_3.772693_g24_i1 PRJNA1174207 455 2761 3.772693 104.16405373 Gammaretrovirus 153135 Viruses Viruses 4241 0   NTclustered gi|1167936613|gb|KY574506.1| 11786 g24 i1 97.585 85.964505613908 2484 45 90 12 279 2761 3720 6189 Murine leukemia virus isolate AKR-L4, complete genome blastn 237348 4241 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;