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contig_metadata

13 rows where bioproject = "PRJNA1174207" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 13 ✖

bioproject 1

  • PRJNA1174207 · 13 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1590269 1590269 PRJNA1174207_P_NODE_26662_length_279_cov_0.805825_g26133_i0 PRJNA1174207 26662 279 0.805825 2.24825175 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 433 7.85e-117   NTclustered gi|922689899|gb|CP012410.1| 712357 g26133 i0 94.624 317.870967741935 279 15 100 0 1 279 52152 51874 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 88686 433 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212
1590287 1590287 PRJNA1174207_P_NODE_27642_length_274_cov_2.029851_g27113_i0 PRJNA1174207 27642 274 2.029851 5.56179174 Leptotrichia wadei 157687 Bacteria Bacteria 507 4.47e-139   NTclustered gi|1708575239|dbj|AP019834.1| 157687 g27113 i0 100 35.0401459854015 274 0 100 0 1 274 131593 131320 Leptotrichia wadei JMUB3933 DNA, complete genome blastn 9601 507 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei
2315731 2315731 PRJNA1174207_P_NODE_16262_length_356_cov_2.141343_g15733_i0 PRJNA1174207 16262 356 2.141343 7.62318108 Fusobacterium 848 Bacteria Bacteria 656 0   NTclustered gi|2446175567|gb|CP117964.1| 851 g15733 i0 100 426.393258426966 355 0 99 0 2 356 996828 997182 Fusobacterium nucleatum strain 2/1/50A chromosome, complete genome blastn 151796 656 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
5419080 5419080 PRJNA1174207_P_NODE_9445_length_501_cov_3.420561_g8919_i0 PRJNA1174207 9445 501 3.420561 17.13701061 Leptotrichia wadei 157687 Bacteria Bacteria 876 0   NTclustered gi|1708582457|dbj|AP019841.1| 157687 g8919 i0 98.204 203.748502994012 501 9 100 0 1 501 1757972 1757472 Leptotrichia wadei JMUB3936 DNA, complete genome blastn 102078 876 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei
8693646 8693646 PRJNA1174207_P_NODE_33567_length_251_cov_0.865169_g33038_i0 PRJNA1174207 33567 251 0.865169 2.17157419 Fusobacterium 848 Bacteria Bacteria 464 2.47e-126   NTclustered gi|1208657894|gb|CP021934.1| 76857 g33038 i0 100 99.199203187251 251 0 100 0 1 251 870134 869884 Fusobacterium nucleatum subsp. polymorphum strain KCOM 1260 (=ChDC F218) genome blastn 24899 464 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum
14344774 14344774 PRJNA1174207_P_NODE_35852_length_248_cov_0.880000_g35323_i0 PRJNA1174207 35852 248 0.88 2.1824 Fusobacterium polymorphum 76857 Bacteria Bacteria 459 1.13e-124   NTclustered gi|2706074160|gb|CP077112.1| 76857 g35323 i0 100 99.6975806451613 248 0 100 0 1 248 2182965 2183212 Fusobacterium polymorphum strain KCOM1272 chromosome, complete genome blastn 24725 459 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum
15068218 15068218 PRJNA1174207_P_NODE_22672_length_298_cov_2.982222_g22143_i0 PRJNA1174207 22672 298 2.982222 8.88702156 Fusobacterium 848 Bacteria Bacteria 278 4.2e-70   NTclustered gi|1208657894|gb|CP021934.1| 76857 g22143 i0 100 97.2684563758389 150 0 99 0 1 150 344428 344577 Fusobacterium nucleatum subsp. polymorphum strain KCOM 1260 (=ChDC F218) genome blastn 28986 278 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum
15618357 15618357 PRJNA1174207_P_NODE_2553_length_1164_cov_4.919340_g2190_i0 PRJNA1174207 2553 1164 4.91934 57.2611176 Leptotrichia wadei 157687 Bacteria Bacteria 2104 0   NTclustered gi|1708582457|dbj|AP019841.1| 157687 g2190 i0 99.313 559.775773195876 1164 7 100 1 1 1164 1756154 1757316 Leptotrichia wadei JMUB3936 DNA, complete genome blastn 651579 2104 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei
17618169 17618169 PRJNA1174207_P_NODE_12254_length_423_cov_2.285714_g11727_i0 PRJNA1174207 12254 423 2.285714 9.66857022 Leptotrichia 32067 Bacteria Bacteria 782 0   NTclustered gi|470484715|ref|NR_076664.1| 40542 g11727 i0 100 481.430260047281 423 0 100 0 1 423 2379 1957 Leptotrichia buccalis strain C-1013-b 23S ribosomal RNA gene, complete sequence blastn 203645 782 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia buccalis
18891968 18891968 PRJNA1174207_P_NODE_1375_length_1634_cov_11.729020_g1124_i0 PRJNA1174207 1375 1634 11.72902 191.6521868 Fusobacterium 848 Bacteria Bacteria 2953 0   NTclustered gi|1370537877|gb|CP028108.1| 860 g1124 i0 99.326 477.077723378213 1632 11 99 0 3 1634 463214 461583 Fusobacterium periodonticum strain 2_1_31 chromosome, complete genome blastn 779545 2953 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium periodonticum
20716901 20716901 PRJNA1174207_P_NODE_23277_length_294_cov_1.918552_g22748_i0 PRJNA1174207 23277 294 1.918552 5.64054288 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 455 1.7800000000000002e-123   NTclustered gi|922689899|gb|CP012410.1| 712357 g22748 i0 94.558 111.095238095238 294 16 100 0 1 294 51892 51599 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 32662 455 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212
20717303 20717303 PRJNA1174207_P_NODE_43837_length_199_cov_4.031746_g43308_i0 PRJNA1174207 43837 199 4.031746 8.02317454 Leptotrichia sp. HMT-225 3058373 Bacteria Bacteria 368 1.51e-97   NTclustered gi|2557559843|gb|CP130323.1| 3058373 g43308 i0 100 82.7889447236181 199 0 100 0 1 199 196899 197097 Leptotrichia sp. HMT-225 chromosome, complete genome blastn 16475 368 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. HMT-225
23267563 23267563 PRJNA1174207_P_NODE_14099_length_388_cov_1.126984_g13570_i0 PRJNA1174207 14099 388 1.126984 4.37269792 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 623 6.259999999999999e-174   NTclustered gi|922689899|gb|CP012410.1| 712357 g13570 i0 95.619 421.29381443299 388 17 100 0 1 388 52159 51772 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 163462 623 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;