RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where bioproject = "PRJNA1174207", tax_kingdom = "Fungi" and tax_phylum = "Microsporidia"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Microsporidia · 5 ✖

tax_kingdom 1

  • Fungi · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA1174207 · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1590190 1590190 PRJNA1174207_P_NODE_22302_length_301_cov_1.688596_g21773_i0 PRJNA1174207 22302 301 1.688596 5.08267396 Enterocytozoon sp. ex Acetes sibogae australis 2881109 Fungi Fungi 374 5.2599999999999996e-99   NTclustered gi|2108103202|gb|OK413268.1| 2881109 g21773 i0 89.298 99.2458471760797 299 30 99 1 1 299 268 564 Enterocytozoon sp. ex Acetes sibogae australis isolate RA19015_21 small subunit ribosomal RNA gene, partial sequence blastn 29873 374 1 Eukaryota Opisthokonta Fungi Microsporidia     Enterocytozoonidae Enterocytozoon Enterocytozoon sp. ex Acetes sibogae australis
2866654 2866654 PRJNA1174207_P_NODE_37743_length_246_cov_0.890173_g37214_i0 PRJNA1174207 37743 246 0.890173 2.18982558 Vittaforma corneae 42399 Fungi Fungi 89.8 1.69e-13   NTclustered gi|667639983|ref|XR_552275.1| 993615 g37214 i0 83.333 2.17886178861789 108 7 44 5 1 108 681 777 Vittaforma corneae ATCC 50505 28S ribosomal RNA (VICG_02297), rRNA blastn 536 89.8 1 Eukaryota Opisthokonta Fungi Microsporidia     Nosematidae Vittaforma Vittaforma corneae
8693730 8693730 PRJNA1174207_P_NODE_40227_length_242_cov_2.710059_g39698_i0 PRJNA1174207 40227 242 2.710059 6.55834278 Eukaryota 2759 Fungi Fungi 172 1.6e-38   NTclustered gi|113470857|gb|DQ680158.2| 174680 g39698 i0 89.209 4.83057851239669 139 14 57 1 5 143 198 335 Glugoides intestinalis isolate Gi3 23S ribosomal RNA gene, partial sequence; 23S-16S ribosomal RNA spacer, complete sequence; and 16S ribosomal RNA gene, partial sequence blastn 1169 172 1 Eukaryota Opisthokonta Fungi Microsporidia     Glugeidae Glugoides Glugoides intestinalis
18892234 18892234 PRJNA1174207_P_NODE_31995_length_256_cov_1.808743_g31466_i0 PRJNA1174207 31995 256 1.808743 4.63038208 Fungi 4751 Fungi Fungi 178 3.68e-40   NTclustered gi|1378896647|gb|MF278562.1| 1485682 g31466 i0 94.783 47.01953125 115 5 45 1 97 211 5537 5650 Mitosporidium daphniae strain UGP3 small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 12037 178 1 Eukaryota Opisthokonta Fungi Microsporidia       Mitosporidium Mitosporidium daphniae
26901676 26901676 PRJNA1174207_P_NODE_29981_length_265_cov_0.968750_g29452_i0 PRJNA1174207 29981 265 0.96875 2.5671875 Eukaryota 2759 Fungi Fungi 53.1 5.25e-6   NR ELQ74604.1 72359 g29452 i0 44 1.68679245283019 50 28 56.6 0 107 256 14 63 ELQ74604.1 GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Trachipleistophora hominis] diamond 447 53.5 0.992523364485981 Eukaryota Opisthokonta Fungi Microsporidia     Pleistophoridae Trachipleistophora Trachipleistophora hominis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;